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CLCC1 (chloride channel CLIC like 1)

Identity

Alias_nameschloride channel CLIC-like 1
Alias_symbol (synonym)MCLC
Other alias
HGNC (Hugo) CLCC1
LocusID (NCBI) 23155
Atlas_Id 61851
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 108929508 and ends at 108963499 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLCC1   29675
Cards
Entrez_Gene (NCBI)CLCC1  23155  chloride channel CLIC like 1
AliasesMCLC
GeneCards (Weizmann)CLCC1
Ensembl hg19 (Hinxton)ENSG00000121940 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121940 [Gene_View]  chr1:108929508-108963499 [Contig_View]  CLCC1 [Vega]
ICGC DataPortalENSG00000121940
TCGA cBioPortalCLCC1
AceView (NCBI)CLCC1
Genatlas (Paris)CLCC1
WikiGenes23155
SOURCE (Princeton)CLCC1
Genetics Home Reference (NIH)CLCC1
Genomic and cartography
GoldenPath hg38 (UCSC)CLCC1  -     chr1:108929508-108963499 -  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLCC1  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblCLCC1 - 1p13.3 [CytoView hg19]  CLCC1 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBICLCC1 [Mapview hg19]  CLCC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB018304 AB052915 AB052916 AB052917 AB052918
RefSeq transcript (Entrez)NM_001048210 NM_001278202 NM_001278203 NM_015127
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLCC1
Cluster EST : UnigeneHs.658489 [ NCBI ]
CGAP (NCI)Hs.658489
Alternative Splicing GalleryENSG00000121940
Gene ExpressionCLCC1 [ NCBI-GEO ]   CLCC1 [ EBI - ARRAY_EXPRESS ]   CLCC1 [ SEEK ]   CLCC1 [ MEM ]
Gene Expression Viewer (FireBrowse)CLCC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23155
GTEX Portal (Tissue expression)CLCC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96S66   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96S66  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96S66
Splice isoforms : SwissVarQ96S66
PhosPhoSitePlusQ96S66
Domains : Interpro (EBI)Chloride_chnl_CLIC-like   
Domain families : Pfam (Sanger)MCLC (PF05934)   
Domain families : Pfam (NCBI)pfam05934   
Conserved Domain (NCBI)CLCC1
DMDM Disease mutations23155
Blocks (Seattle)CLCC1
SuperfamilyQ96S66
Human Protein AtlasENSG00000121940
Peptide AtlasQ96S66
HPRD17471
IPIIPI00045511   IPI00396547   IPI00103757   IPI00103756   IPI00513790   
Protein Interaction databases
DIP (DOE-UCLA)Q96S66
IntAct (EBI)Q96S66
FunCoupENSG00000121940
BioGRIDCLCC1
STRING (EMBL)CLCC1
ZODIACCLCC1
Ontologies - Pathways
QuickGOQ96S66
Ontology : AmiGOchloride channel activity  nucleus  endoplasmic reticulum  Golgi apparatus  membrane  chloride channel complex  intracellular membrane-bounded organelle  chloride transmembrane transport  
Ontology : EGO-EBIchloride channel activity  nucleus  endoplasmic reticulum  Golgi apparatus  membrane  chloride channel complex  intracellular membrane-bounded organelle  chloride transmembrane transport  
NDEx NetworkCLCC1
Atlas of Cancer Signalling NetworkCLCC1
Wikipedia pathwaysCLCC1
Orthology - Evolution
OrthoDB23155
GeneTree (enSembl)ENSG00000121940
Phylogenetic Trees/Animal Genes : TreeFamCLCC1
HOVERGENQ96S66
HOGENOMQ96S66
Homologs : HomoloGeneCLCC1
Homology/Alignments : Family Browser (UCSC)CLCC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLCC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLCC1
dbVarCLCC1
ClinVarCLCC1
1000_GenomesCLCC1 
Exome Variant ServerCLCC1
ExAC (Exome Aggregation Consortium)CLCC1 (select the gene name)
Genetic variants : HAPMAP23155
Genomic Variants (DGV)CLCC1 [DGVbeta]
DECIPHERCLCC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLCC1 
Mutations
ICGC Data PortalCLCC1 
TCGA Data PortalCLCC1 
Broad Tumor PortalCLCC1
OASIS PortalCLCC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLCC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLCC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLCC1
DgiDB (Drug Gene Interaction Database)CLCC1
DoCM (Curated mutations)CLCC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLCC1 (select a term)
intoGenCLCC1
Cancer3DCLCC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLCC1
Genetic Testing Registry CLCC1
NextProtQ96S66 [Medical]
TSGene23155
GENETestsCLCC1
Target ValidationCLCC1
Huge Navigator CLCC1 [HugePedia]
snp3D : Map Gene to Disease23155
BioCentury BCIQCLCC1
ClinGenCLCC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23155
Chemical/Pharm GKB GenePA142672105
Clinical trialCLCC1
Miscellaneous
canSAR (ICR)CLCC1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLCC1
EVEXCLCC1
GoPubMedCLCC1
iHOPCLCC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:12:22 CEST 2017

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