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CLCNKA (chloride channel, voltage-sensitive Ka)

Identity

Other namesCLCK1
ClC-K1
hClC-Ka
HGNC (Hugo) CLCNKA
LocusID (NCBI) 1187
Location 1p36.13
Location_base_pair Starts at 16348486 and ends at 16360545 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CLCNKA   2026
Cards
Entrez_Gene (NCBI)CLCNKA  1187  chloride channel, voltage-sensitive Ka
GeneCards (Weizmann)CLCNKA
Ensembl (Hinxton)ENSG00000186510 [Gene_View]  chr1:16348486-16360545 [Contig_View]  CLCNKA [Vega]
ICGC DataPortalENSG00000186510
AceView (NCBI)CLCNKA
Genatlas (Paris)CLCNKA
WikiGenes1187
SOURCE (Princeton)NM_001042704 NM_001257139 NM_004070
Genomic and cartography
GoldenPath (UCSC)CLCNKA  -  1p36.13   chr1:16348486-16360545 +  1p36.13   [Description]    (hg19-Feb_2009)
EnsemblCLCNKA - 1p36.13 [CytoView]
Mapping of homologs : NCBICLCNKA [Mapview]
OMIM602024   613090   
Gene and transcription
Genbank (Entrez)AI821546 AK225550 AK290814 AK293476 AK293586
RefSeq transcript (Entrez)NM_001042704 NM_001257139 NM_004070
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_009359 NT_032977 NW_001838564 NW_004929289
Consensus coding sequences : CCDS (NCBI)CLCNKA
Cluster EST : UnigeneHs.591533 [ NCBI ]
CGAP (NCI)Hs.591533
Alternative Splicing : Fast-db (Paris)GSHG0000174
Alternative Splicing GalleryENSG00000186510
Gene ExpressionCLCNKA [ NCBI-GEO ]     CLCNKA [ SEEK ]   CLCNKA [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51800 (Uniprot)
NextProtP51800  [Medical]
With graphics : InterProP51800
Splice isoforms : SwissVarP51800 (Swissvar)
Domaine pattern : Prosite (Expaxy)CBS (PS51371)   
Domains : Interpro (EBI)CBS_dom    Cl-channel_core    Cl-channel_volt-gated    Cl_channel-K   
Related proteins : CluSTrP51800
Domain families : Pfam (Sanger)CBS (PF00571)    Voltage_CLC (PF00654)   
Domain families : Pfam (NCBI)pfam00571    pfam00654   
Domain families : Smart (EMBL)CBS (SM00116)  
DMDM Disease mutations1187
Blocks (Seattle)P51800
PDB (SRS)2PFI   
PDB (PDBSum)2PFI   
PDB (IMB)2PFI   
PDB (RSDB)2PFI   
Human Protein AtlasENSG00000186510
Peptide AtlasP51800
HPRD03608
IPIIPI00020879   IPI00908815   IPI00641999   
Protein Interaction databases
DIP (DOE-UCLA)P51800
IntAct (EBI)P51800
FunCoupENSG00000186510
BioGRIDCLCNKA
InParanoidP51800
Interologous Interaction database P51800
IntegromeDBCLCNKA
STRING (EMBL)CLCNKA
Ontologies - Pathways
Ontology : AmiGOvoltage-gated chloride channel activity  plasma membrane  integral component of plasma membrane  transport  excretion  adenyl nucleotide binding  ion transmembrane transport  chloride channel complex  regulation of ion transmembrane transport  regulation of anion transport  regulation of anion transport  metal ion binding  transmembrane transport  chloride transmembrane transport  
Ontology : EGO-EBIvoltage-gated chloride channel activity  plasma membrane  integral component of plasma membrane  transport  excretion  adenyl nucleotide binding  ion transmembrane transport  chloride channel complex  regulation of ion transmembrane transport  regulation of anion transport  regulation of anion transport  metal ion binding  transmembrane transport  chloride transmembrane transport  
Protein Interaction DatabaseCLCNKA
Wikipedia pathwaysCLCNKA
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CLCNKA
SNP (GeneSNP Utah)CLCNKA
SNP : HGBaseCLCNKA
Genetic variants : HAPMAPCLCNKA
1000_GenomesCLCNKA 
ICGC programENSG00000186510 
CONAN: Copy Number AnalysisCLCNKA 
Somatic Mutations in Cancer : COSMICCLCNKA 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Mutations and Diseases : HGMDCLCNKA
OMIM602024    613090   
MedgenCLCNKA
GENETestsCLCNKA
Disease Genetic AssociationCLCNKA
Huge Navigator CLCNKA [HugePedia]  CLCNKA [HugeCancerGEM]
Genomic VariantsCLCNKA  CLCNKA [DGVbeta]
Exome VariantCLCNKA
dbVarCLCNKA
ClinVarCLCNKA
snp3D : Map Gene to Disease1187
General knowledge
Homologs : HomoloGeneCLCNKA
Homology/Alignments : Family Browser (UCSC)CLCNKA
Phylogenetic Trees/Animal Genes : TreeFamCLCNKA
Chemical/Protein Interactions : CTD1187
Chemical/Pharm GKB GenePA26553
Clinical trialCLCNKA
Cancer Resource (Charite)ENSG00000186510
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
CoreMineCLCNKA
iHOPCLCNKA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 12:39:07 CEST 2014

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