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CLDN15 (claudin 15)

Identity

Other alias-
HGNC (Hugo) CLDN15
LocusID (NCBI) 24146
Atlas_Id 61857
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 101232092 and ends at 101238820 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLDN15   2036
Cards
Entrez_Gene (NCBI)CLDN15  24146  claudin 15
Aliases
GeneCards (Weizmann)CLDN15
Ensembl hg19 (Hinxton)ENSG00000106404 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106404 [Gene_View]  chr7:101232092-101238820 [Contig_View]  CLDN15 [Vega]
ICGC DataPortalENSG00000106404
TCGA cBioPortalCLDN15
AceView (NCBI)CLDN15
Genatlas (Paris)CLDN15
WikiGenes24146
SOURCE (Princeton)CLDN15
Genetics Home Reference (NIH)CLDN15
Genomic and cartography
GoldenPath hg38 (UCSC)CLDN15  -     chr7:101232092-101238820 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLDN15  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblCLDN15 - 7q22.1 [CytoView hg19]  CLDN15 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBICLDN15 [Mapview hg19]  CLDN15 [Mapview hg38]
OMIM615778   
Gene and transcription
Genbank (Entrez)AA514265 AJ245738 AK056103 AK124705 BC010160
RefSeq transcript (Entrez)NM_001185080 NM_014343 NM_138429
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLDN15
Cluster EST : UnigeneHs.38738 [ NCBI ]
CGAP (NCI)Hs.38738
Alternative Splicing GalleryENSG00000106404
Gene ExpressionCLDN15 [ NCBI-GEO ]   CLDN15 [ EBI - ARRAY_EXPRESS ]   CLDN15 [ SEEK ]   CLDN15 [ MEM ]
Gene Expression Viewer (FireBrowse)CLDN15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)24146
GTEX Portal (Tissue expression)CLDN15
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56746   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56746  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56746
Splice isoforms : SwissVarP56746
PhosPhoSitePlusP56746
Domaine pattern : Prosite (Expaxy)CLAUDIN (PS01346)   
Domains : Interpro (EBI)Claudin    Claudin15    Claudin_CS    PMP22/EMP/MP20/Claudin   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
Conserved Domain (NCBI)CLDN15
DMDM Disease mutations24146
Blocks (Seattle)CLDN15
SuperfamilyP56746
Human Protein AtlasENSG00000106404
Peptide AtlasP56746
HPRD13065
IPIIPI00011082   IPI00101418   IPI00927773   IPI00926696   IPI00927348   
Protein Interaction databases
DIP (DOE-UCLA)P56746
IntAct (EBI)P56746
FunCoupENSG00000106404
BioGRIDCLDN15
STRING (EMBL)CLDN15
ZODIACCLDN15
Ontologies - Pathways
QuickGOP56746
Ontology : AmiGOstructural molecule activity  bicellular tight junction  ion transport  integral component of membrane  lateral plasma membrane  calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules  identical protein binding  
Ontology : EGO-EBIstructural molecule activity  bicellular tight junction  ion transport  integral component of membrane  lateral plasma membrane  calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules  identical protein binding  
Pathways : KEGGCell adhesion molecules (CAMs)    Tight junction    Leukocyte transendothelial migration    Hepatitis C   
NDEx NetworkCLDN15
Atlas of Cancer Signalling NetworkCLDN15
Wikipedia pathwaysCLDN15
Orthology - Evolution
OrthoDB24146
GeneTree (enSembl)ENSG00000106404
Phylogenetic Trees/Animal Genes : TreeFamCLDN15
HOVERGENP56746
HOGENOMP56746
Homologs : HomoloGeneCLDN15
Homology/Alignments : Family Browser (UCSC)CLDN15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLDN15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLDN15
dbVarCLDN15
ClinVarCLDN15
1000_GenomesCLDN15 
Exome Variant ServerCLDN15
ExAC (Exome Aggregation Consortium)CLDN15 (select the gene name)
Genetic variants : HAPMAP24146
Genomic Variants (DGV)CLDN15 [DGVbeta]
DECIPHERCLDN15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLDN15 
Mutations
ICGC Data PortalCLDN15 
TCGA Data PortalCLDN15 
Broad Tumor PortalCLDN15
OASIS PortalCLDN15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLDN15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLDN15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLDN15
DgiDB (Drug Gene Interaction Database)CLDN15
DoCM (Curated mutations)CLDN15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLDN15 (select a term)
intoGenCLDN15
Cancer3DCLDN15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615778   
Orphanet
MedgenCLDN15
Genetic Testing Registry CLDN15
NextProtP56746 [Medical]
TSGene24146
GENETestsCLDN15
Huge Navigator CLDN15 [HugePedia]
snp3D : Map Gene to Disease24146
BioCentury BCIQCLDN15
ClinGenCLDN15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD24146
Chemical/Pharm GKB GenePA26562
Clinical trialCLDN15
Miscellaneous
canSAR (ICR)CLDN15 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLDN15
EVEXCLDN15
GoPubMedCLDN15
iHOPCLDN15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:06:03 CEST 2017

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