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CLDN17 (claudin 17)

Identity

Alias_symbol (synonym)MGC126552
MGC126554
Other alias-
HGNC (Hugo) CLDN17
LocusID (NCBI) 26285
Atlas_Id 54086
Location 21q21.3  [Link to chromosome band 21q21]
Location_base_pair Starts at 30165923 and ends at 30166653 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLDN17   2038
Cards
Entrez_Gene (NCBI)CLDN17  26285  claudin 17
Aliases
GeneCards (Weizmann)CLDN17
Ensembl hg19 (Hinxton)ENSG00000156282 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156282 [Gene_View]  chr21:30165923-30166653 [Contig_View]  CLDN17 [Vega]
ICGC DataPortalENSG00000156282
TCGA cBioPortalCLDN17
AceView (NCBI)CLDN17
Genatlas (Paris)CLDN17
WikiGenes26285
SOURCE (Princeton)CLDN17
Genetics Home Reference (NIH)CLDN17
Genomic and cartography
GoldenPath hg38 (UCSC)CLDN17  -     chr21:30165923-30166653 -  21q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLDN17  -     21q21.3   [Description]    (hg19-Feb_2009)
EnsemblCLDN17 - 21q21.3 [CytoView hg19]  CLDN17 - 21q21.3 [CytoView hg38]
Mapping of homologs : NCBICLDN17 [Mapview hg19]  CLDN17 [Mapview hg38]
OMIM617005   
Gene and transcription
Genbank (Entrez)AY358094 BC101503 BC101505
RefSeq transcript (Entrez)NM_012131
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLDN17
Cluster EST : UnigeneHs.258589 [ NCBI ]
CGAP (NCI)Hs.258589
Alternative Splicing GalleryENSG00000156282
Gene ExpressionCLDN17 [ NCBI-GEO ]   CLDN17 [ EBI - ARRAY_EXPRESS ]   CLDN17 [ SEEK ]   CLDN17 [ MEM ]
Gene Expression Viewer (FireBrowse)CLDN17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26285
GTEX Portal (Tissue expression)CLDN17
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56750   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56750  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56750
Splice isoforms : SwissVarP56750
PhosPhoSitePlusP56750
Domaine pattern : Prosite (Expaxy)CLAUDIN (PS01346)   
Domains : Interpro (EBI)Claudin    Claudin_CS    PMP22/EMP/MP20/Claudin   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
Conserved Domain (NCBI)CLDN17
DMDM Disease mutations26285
Blocks (Seattle)CLDN17
SuperfamilyP56750
Human Protein AtlasENSG00000156282
Peptide AtlasP56750
HPRD10833
IPIIPI00011103   
Protein Interaction databases
DIP (DOE-UCLA)P56750
IntAct (EBI)P56750
FunCoupENSG00000156282
BioGRIDCLDN17
STRING (EMBL)CLDN17
ZODIACCLDN17
Ontologies - Pathways
QuickGOP56750
Ontology : AmiGOstructural molecule activity  chloride channel activity  protein binding  plasma membrane  bicellular tight junction  calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules  chloride channel complex  identical protein binding  chloride transmembrane transport  
Ontology : EGO-EBIstructural molecule activity  chloride channel activity  protein binding  plasma membrane  bicellular tight junction  calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules  chloride channel complex  identical protein binding  chloride transmembrane transport  
Pathways : KEGGCell adhesion molecules (CAMs)    Tight junction    Leukocyte transendothelial migration    Hepatitis C   
NDEx NetworkCLDN17
Atlas of Cancer Signalling NetworkCLDN17
Wikipedia pathwaysCLDN17
Orthology - Evolution
OrthoDB26285
GeneTree (enSembl)ENSG00000156282
Phylogenetic Trees/Animal Genes : TreeFamCLDN17
HOVERGENP56750
HOGENOMP56750
Homologs : HomoloGeneCLDN17
Homology/Alignments : Family Browser (UCSC)CLDN17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLDN17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLDN17
dbVarCLDN17
ClinVarCLDN17
1000_GenomesCLDN17 
Exome Variant ServerCLDN17
ExAC (Exome Aggregation Consortium)CLDN17 (select the gene name)
Genetic variants : HAPMAP26285
Genomic Variants (DGV)CLDN17 [DGVbeta]
DECIPHERCLDN17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLDN17 
Mutations
ICGC Data PortalCLDN17 
TCGA Data PortalCLDN17 
Broad Tumor PortalCLDN17
OASIS PortalCLDN17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLDN17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLDN17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLDN17
DgiDB (Drug Gene Interaction Database)CLDN17
DoCM (Curated mutations)CLDN17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLDN17 (select a term)
intoGenCLDN17
Cancer3DCLDN17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617005   
Orphanet
MedgenCLDN17
Genetic Testing Registry CLDN17
NextProtP56750 [Medical]
TSGene26285
GENETestsCLDN17
Huge Navigator CLDN17 [HugePedia]
snp3D : Map Gene to Disease26285
BioCentury BCIQCLDN17
ClinGenCLDN17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26285
Chemical/Pharm GKB GenePA26564
Clinical trialCLDN17
Miscellaneous
canSAR (ICR)CLDN17 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLDN17
EVEXCLDN17
GoPubMedCLDN17
iHOPCLDN17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:10:50 CEST 2017

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