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CLDN19 (claudin 19)

Identity

Other aliasHOMG5
HGNC (Hugo) CLDN19
LocusID (NCBI) 149461
Atlas_Id 61858
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 43198764 and ends at 43205925 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLDN19   2040
Cards
Entrez_Gene (NCBI)CLDN19  149461  claudin 19
AliasesHOMG5
GeneCards (Weizmann)CLDN19
Ensembl hg19 (Hinxton)ENSG00000164007 [Gene_View]  chr1:43198764-43205925 [Contig_View]  CLDN19 [Vega]
Ensembl hg38 (Hinxton)ENSG00000164007 [Gene_View]  chr1:43198764-43205925 [Contig_View]  CLDN19 [Vega]
ICGC DataPortalENSG00000164007
TCGA cBioPortalCLDN19
AceView (NCBI)CLDN19
Genatlas (Paris)CLDN19
WikiGenes149461
SOURCE (Princeton)CLDN19
Genetics Home Reference (NIH)CLDN19
Genomic and cartography
GoldenPath hg19 (UCSC)CLDN19  -     chr1:43198764-43205925 -  1p34.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLDN19  -     1p34.2   [Description]    (hg38-Dec_2013)
EnsemblCLDN19 - 1p34.2 [CytoView hg19]  CLDN19 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBICLDN19 [Mapview hg19]  CLDN19 [Mapview hg38]
OMIM248190   610036   
Gene and transcription
Genbank (Entrez)AF497644 AK056118 AK096063 AK291197 AK298992
RefSeq transcript (Entrez)NM_001123395 NM_001185117 NM_148960
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_008993 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)CLDN19
Cluster EST : UnigeneHs.496270 [ NCBI ]
CGAP (NCI)Hs.496270
Alternative Splicing GalleryENSG00000164007
Gene ExpressionCLDN19 [ NCBI-GEO ]   CLDN19 [ EBI - ARRAY_EXPRESS ]   CLDN19 [ SEEK ]   CLDN19 [ MEM ]
Gene Expression Viewer (FireBrowse)CLDN19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149461
GTEX Portal (Tissue expression)CLDN19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6F1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6F1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6F1
Splice isoforms : SwissVarQ8N6F1
PhosPhoSitePlusQ8N6F1
Domaine pattern : Prosite (Expaxy)CLAUDIN (PS01346)   
Domains : Interpro (EBI)Claudin    Claudin_CS    PMP22/EMP/MP20/Claudin   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
Conserved Domain (NCBI)CLDN19
DMDM Disease mutations149461
Blocks (Seattle)CLDN19
SuperfamilyQ8N6F1
Human Protein AtlasENSG00000164007
Peptide AtlasQ8N6F1
HPRD10834
IPIIPI00412494   IPI00412495   IPI00922261   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6F1
IntAct (EBI)Q8N6F1
FunCoupENSG00000164007
BioGRIDCLDN19
STRING (EMBL)CLDN19
ZODIACCLDN19
Ontologies - Pathways
QuickGOQ8N6F1
Ontology : AmiGOstructural molecule activity  nucleus  cytoplasm  bicellular tight junction  bicellular tight junction  visual perception  integral component of membrane  basolateral plasma membrane  calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules  neuronal action potential propagation  identical protein binding  apical junction complex  apical junction assembly  response to stimulus  
Ontology : EGO-EBIstructural molecule activity  nucleus  cytoplasm  bicellular tight junction  bicellular tight junction  visual perception  integral component of membrane  basolateral plasma membrane  calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules  neuronal action potential propagation  identical protein binding  apical junction complex  apical junction assembly  response to stimulus  
Pathways : KEGGCell adhesion molecules (CAMs)    Tight junction    Leukocyte transendothelial migration    Hepatitis C   
NDEx NetworkCLDN19
Atlas of Cancer Signalling NetworkCLDN19
Wikipedia pathwaysCLDN19
Orthology - Evolution
OrthoDB149461
GeneTree (enSembl)ENSG00000164007
Phylogenetic Trees/Animal Genes : TreeFamCLDN19
HOVERGENQ8N6F1
HOGENOMQ8N6F1
Homologs : HomoloGeneCLDN19
Homology/Alignments : Family Browser (UCSC)CLDN19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLDN19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLDN19
dbVarCLDN19
ClinVarCLDN19
1000_GenomesCLDN19 
Exome Variant ServerCLDN19
ExAC (Exome Aggregation Consortium)CLDN19 (select the gene name)
Genetic variants : HAPMAP149461
Genomic Variants (DGV)CLDN19 [DGVbeta]
DECIPHER (Syndromes)1:43198764-43205925  ENSG00000164007
CONAN: Copy Number AnalysisCLDN19 
Mutations
ICGC Data PortalCLDN19 
TCGA Data PortalCLDN19 
Broad Tumor PortalCLDN19
OASIS PortalCLDN19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLDN19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLDN19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLDN19
DgiDB (Drug Gene Interaction Database)CLDN19
DoCM (Curated mutations)CLDN19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLDN19 (select a term)
intoGenCLDN19
Cancer3DCLDN19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM248190    610036   
Orphanet2078   
MedgenCLDN19
Genetic Testing Registry CLDN19
NextProtQ8N6F1 [Medical]
TSGene149461
GENETestsCLDN19
Huge Navigator CLDN19 [HugePedia]
snp3D : Map Gene to Disease149461
BioCentury BCIQCLDN19
ClinGenCLDN19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149461
Chemical/Pharm GKB GenePA26566
Clinical trialCLDN19
Miscellaneous
canSAR (ICR)CLDN19 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLDN19
EVEXCLDN19
GoPubMedCLDN19
iHOPCLDN19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:35 CET 2017

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