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CLDN20 (claudin 20)

Identity

Other alias-
HGNC (Hugo) CLDN20
LocusID (NCBI) 49861
Atlas_Id 61859
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 155264013 and ends at 155276548 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLDN20   2042
Cards
Entrez_Gene (NCBI)CLDN20  49861  claudin 20
Aliases
GeneCards (Weizmann)CLDN20
Ensembl hg19 (Hinxton)ENSG00000171217 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171217 [Gene_View]  ENSG00000171217 [Sequence]  chr6:155264013-155276548 [Contig_View]  CLDN20 [Vega]
ICGC DataPortalENSG00000171217
TCGA cBioPortalCLDN20
AceView (NCBI)CLDN20
Genatlas (Paris)CLDN20
WikiGenes49861
SOURCE (Princeton)CLDN20
Genetics Home Reference (NIH)CLDN20
Genomic and cartography
GoldenPath hg38 (UCSC)CLDN20  -     chr6:155264013-155276548 +  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLDN20  -     6q25.3   [Description]    (hg19-Feb_2009)
EnsemblCLDN20 - 6q25.3 [CytoView hg19]  CLDN20 - 6q25.3 [CytoView hg38]
Mapping of homologs : NCBICLDN20 [Mapview hg19]  CLDN20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC020838 HM005642 HQ447712
RefSeq transcript (Entrez)NM_001001346
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLDN20
Cluster EST : UnigeneHs.567491 [ NCBI ]
CGAP (NCI)Hs.567491
Alternative Splicing GalleryENSG00000171217
Gene ExpressionCLDN20 [ NCBI-GEO ]   CLDN20 [ EBI - ARRAY_EXPRESS ]   CLDN20 [ SEEK ]   CLDN20 [ MEM ]
Gene Expression Viewer (FireBrowse)CLDN20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)49861
GTEX Portal (Tissue expression)CLDN20
Human Protein AtlasENSG00000171217-CLDN20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56880   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56880  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56880
Splice isoforms : SwissVarP56880
PhosPhoSitePlusP56880
Domaine pattern : Prosite (Expaxy)CLAUDIN (PS01346)   
Domains : Interpro (EBI)Claudin    Claudin_CS    PMP22/EMP/MP20/Claudin   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
Conserved Domain (NCBI)CLDN20
DMDM Disease mutations49861
Blocks (Seattle)CLDN20
SuperfamilyP56880
Human Protein Atlas [tissue]ENSG00000171217-CLDN20 [tissue]
Peptide AtlasP56880
HPRD13067
IPIIPI00011634   
Protein Interaction databases
DIP (DOE-UCLA)P56880
IntAct (EBI)P56880
FunCoupENSG00000171217
BioGRIDCLDN20
STRING (EMBL)CLDN20
ZODIACCLDN20
Ontologies - Pathways
QuickGOP56880
Ontology : AmiGOstructural molecule activity  plasma membrane  bicellular tight junction  integral component of membrane  calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules  identical protein binding  
Ontology : EGO-EBIstructural molecule activity  plasma membrane  bicellular tight junction  integral component of membrane  calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules  identical protein binding  
Pathways : KEGGLeukocyte transendothelial migration    Cell adhesion molecules (CAMs)    Tight junction   
NDEx NetworkCLDN20
Atlas of Cancer Signalling NetworkCLDN20
Wikipedia pathwaysCLDN20
Orthology - Evolution
OrthoDB49861
GeneTree (enSembl)ENSG00000171217
Phylogenetic Trees/Animal Genes : TreeFamCLDN20
HOVERGENP56880
HOGENOMP56880
Homologs : HomoloGeneCLDN20
Homology/Alignments : Family Browser (UCSC)CLDN20
Gene fusions - Rearrangements
Fusion : QuiverCLDN20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLDN20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLDN20
dbVarCLDN20
ClinVarCLDN20
1000_GenomesCLDN20 
Exome Variant ServerCLDN20
ExAC (Exome Aggregation Consortium)ENSG00000171217
GNOMAD BrowserENSG00000171217
Varsome BrowserCLDN20
Genetic variants : HAPMAP49861
Genomic Variants (DGV)CLDN20 [DGVbeta]
DECIPHERCLDN20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLDN20 
Mutations
ICGC Data PortalCLDN20 
TCGA Data PortalCLDN20 
Broad Tumor PortalCLDN20
OASIS PortalCLDN20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLDN20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLDN20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLDN20
DgiDB (Drug Gene Interaction Database)CLDN20
DoCM (Curated mutations)CLDN20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLDN20 (select a term)
intoGenCLDN20
Cancer3DCLDN20(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCLDN20
MedgenCLDN20
Genetic Testing Registry CLDN20
NextProtP56880 [Medical]
TSGene49861
GENETestsCLDN20
Target ValidationCLDN20
Huge Navigator CLDN20 [HugePedia]
snp3D : Map Gene to Disease49861
BioCentury BCIQCLDN20
ClinGenCLDN20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD49861
Chemical/Pharm GKB GenePA26568
Clinical trialCLDN20
Miscellaneous
canSAR (ICR)CLDN20 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLDN20
EVEXCLDN20
GoPubMedCLDN20
iHOPCLDN20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:40:46 CEST 2018

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