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CLDN22 (claudin 22)

Identity

Alias_symbol (synonym)CLDN21
Other alias
HGNC (Hugo) CLDN22
LocusID (NCBI) 53842
Atlas_Id 61860
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 183318067 and ends at 183320774 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLDN22   2044
Cards
Entrez_Gene (NCBI)CLDN22  53842  claudin 22
AliasesCLDN21
GeneCards (Weizmann)CLDN22
Ensembl hg19 (Hinxton)ENSG00000177300 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177300 [Gene_View]  chr4:183318067-183320774 [Contig_View]  CLDN22 [Vega]
ICGC DataPortalENSG00000177300
TCGA cBioPortalCLDN22
AceView (NCBI)CLDN22
Genatlas (Paris)CLDN22
WikiGenes53842
SOURCE (Princeton)CLDN22
Genetics Home Reference (NIH)CLDN22
Genomic and cartography
GoldenPath hg38 (UCSC)CLDN22  -     chr4:183318067-183320774 -  4q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLDN22  -     4q35.1   [Description]    (hg19-Feb_2009)
EnsemblCLDN22 - 4q35.1 [CytoView hg19]  CLDN22 - 4q35.1 [CytoView hg38]
Mapping of homologs : NCBICLDN22 [Mapview hg19]  CLDN22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098064 AK303864
RefSeq transcript (Entrez)NM_001111319
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLDN22
Cluster EST : UnigeneHs.333179 [ NCBI ]
CGAP (NCI)Hs.333179
Alternative Splicing GalleryENSG00000177300
Gene ExpressionCLDN22 [ NCBI-GEO ]   CLDN22 [ EBI - ARRAY_EXPRESS ]   CLDN22 [ SEEK ]   CLDN22 [ MEM ]
Gene Expression Viewer (FireBrowse)CLDN22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53842
GTEX Portal (Tissue expression)CLDN22
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7P3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7P3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7P3
Splice isoforms : SwissVarQ8N7P3
PhosPhoSitePlusQ8N7P3
Domaine pattern : Prosite (Expaxy)CLAUDIN (PS01346)   
Domains : Interpro (EBI)Claudin    Claudin_CS    PMP22/EMP/MP20/Claudin   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
Conserved Domain (NCBI)CLDN22
DMDM Disease mutations53842
Blocks (Seattle)CLDN22
SuperfamilyQ8N7P3
Human Protein AtlasENSG00000177300
Peptide AtlasQ8N7P3
IPIIPI00332356   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7P3
IntAct (EBI)Q8N7P3
FunCoupENSG00000177300
BioGRIDCLDN22
STRING (EMBL)CLDN22
ZODIACCLDN22
Ontologies - Pathways
QuickGOQ8N7P3
Ontology : AmiGOstructural molecule activity  plasma membrane  bicellular tight junction  integral component of membrane  calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules  identical protein binding  
Ontology : EGO-EBIstructural molecule activity  plasma membrane  bicellular tight junction  integral component of membrane  calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules  identical protein binding  
Pathways : KEGGCell adhesion molecules (CAMs)    Tight junction    Leukocyte transendothelial migration    Hepatitis C   
NDEx NetworkCLDN22
Atlas of Cancer Signalling NetworkCLDN22
Wikipedia pathwaysCLDN22
Orthology - Evolution
OrthoDB53842
GeneTree (enSembl)ENSG00000177300
Phylogenetic Trees/Animal Genes : TreeFamCLDN22
HOVERGENQ8N7P3
HOGENOMQ8N7P3
Homologs : HomoloGeneCLDN22
Homology/Alignments : Family Browser (UCSC)CLDN22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLDN22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLDN22
dbVarCLDN22
ClinVarCLDN22
1000_GenomesCLDN22 
Exome Variant ServerCLDN22
ExAC (Exome Aggregation Consortium)CLDN22 (select the gene name)
Genetic variants : HAPMAP53842
Genomic Variants (DGV)CLDN22 [DGVbeta]
DECIPHERCLDN22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLDN22 
Mutations
ICGC Data PortalCLDN22 
TCGA Data PortalCLDN22 
Broad Tumor PortalCLDN22
OASIS PortalCLDN22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLDN22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLDN22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLDN22
DgiDB (Drug Gene Interaction Database)CLDN22
DoCM (Curated mutations)CLDN22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLDN22 (select a term)
intoGenCLDN22
Cancer3DCLDN22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLDN22
Genetic Testing Registry CLDN22
NextProtQ8N7P3 [Medical]
TSGene53842
GENETestsCLDN22
Target ValidationCLDN22
Huge Navigator CLDN22 [HugePedia]
snp3D : Map Gene to Disease53842
BioCentury BCIQCLDN22
ClinGenCLDN22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53842
Chemical/Pharm GKB GenePA26570
Clinical trialCLDN22
Miscellaneous
canSAR (ICR)CLDN22 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLDN22
EVEXCLDN22
GoPubMedCLDN22
iHOPCLDN22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:47 CEST 2017

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