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CLDN23 (claudin 23)

Identity

Alias_symbol (synonym)CLDNL
Other aliashCG1646163
HGNC (Hugo) CLDN23
LocusID (NCBI) 137075
Atlas_Id 46054
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 8559666 and ends at 8561617 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLDN23   17591
Cards
Entrez_Gene (NCBI)CLDN23  137075  claudin 23
AliasesCLDNL; hCG1646163
GeneCards (Weizmann)CLDN23
Ensembl hg19 (Hinxton)ENSG00000253958 [Gene_View]  chr8:8559666-8561617 [Contig_View]  CLDN23 [Vega]
Ensembl hg38 (Hinxton)ENSG00000253958 [Gene_View]  chr8:8559666-8561617 [Contig_View]  CLDN23 [Vega]
ICGC DataPortalENSG00000253958
TCGA cBioPortalCLDN23
AceView (NCBI)CLDN23
Genatlas (Paris)CLDN23
WikiGenes137075
SOURCE (Princeton)CLDN23
Genetics Home Reference (NIH)CLDN23
Genomic and cartography
GoldenPath hg19 (UCSC)CLDN23  -     chr8:8559666-8561617 +  8p23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLDN23  -     8p23.1   [Description]    (hg38-Dec_2013)
EnsemblCLDN23 - 8p23.1 [CytoView hg19]  CLDN23 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBICLDN23 [Mapview hg19]  CLDN23 [Mapview hg38]
OMIM609203   
Gene and transcription
Genbank (Entrez)AK123547 BC016047 BC125148 BC125149 Z36835
RefSeq transcript (Entrez)NM_194284
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_077531 NW_004929336
Consensus coding sequences : CCDS (NCBI)CLDN23
Cluster EST : UnigeneHs.183617 [ NCBI ]
CGAP (NCI)Hs.183617
Alternative Splicing GalleryENSG00000253958
Gene ExpressionCLDN23 [ NCBI-GEO ]   CLDN23 [ EBI - ARRAY_EXPRESS ]   CLDN23 [ SEEK ]   CLDN23 [ MEM ]
Gene Expression Viewer (FireBrowse)CLDN23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)137075
GTEX Portal (Tissue expression)CLDN23
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96B33   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96B33  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96B33
Splice isoforms : SwissVarQ96B33
PhosPhoSitePlusQ96B33
Domaine pattern : Prosite (Expaxy)CLAUDIN (PS01346)   
Domains : Interpro (EBI)Claudin    Claudin_CS    PMP22/EMP/MP20/Claudin   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
Conserved Domain (NCBI)CLDN23
DMDM Disease mutations137075
Blocks (Seattle)CLDN23
SuperfamilyQ96B33
Human Protein AtlasENSG00000253958
Peptide AtlasQ96B33
HPRD13069
IPIIPI00059710   IPI00883600   
Protein Interaction databases
DIP (DOE-UCLA)Q96B33
IntAct (EBI)Q96B33
FunCoupENSG00000253958
BioGRIDCLDN23
STRING (EMBL)CLDN23
ZODIACCLDN23
Ontologies - Pathways
QuickGOQ96B33
Ontology : AmiGOstructural molecule activity  plasma membrane  bicellular tight junction  integral component of membrane  calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules  identical protein binding  
Ontology : EGO-EBIstructural molecule activity  plasma membrane  bicellular tight junction  integral component of membrane  calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules  identical protein binding  
Pathways : KEGGCell adhesion molecules (CAMs)    Tight junction    Leukocyte transendothelial migration    Hepatitis C   
NDEx NetworkCLDN23
Atlas of Cancer Signalling NetworkCLDN23
Wikipedia pathwaysCLDN23
Orthology - Evolution
OrthoDB137075
GeneTree (enSembl)ENSG00000253958
Phylogenetic Trees/Animal Genes : TreeFamCLDN23
HOVERGENQ96B33
HOGENOMQ96B33
Homologs : HomoloGeneCLDN23
Homology/Alignments : Family Browser (UCSC)CLDN23
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLDN23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLDN23
dbVarCLDN23
ClinVarCLDN23
1000_GenomesCLDN23 
Exome Variant ServerCLDN23
ExAC (Exome Aggregation Consortium)CLDN23 (select the gene name)
Genetic variants : HAPMAP137075
Genomic Variants (DGV)CLDN23 [DGVbeta]
DECIPHER (Syndromes)8:8559666-8561617  ENSG00000253958
CONAN: Copy Number AnalysisCLDN23 
Mutations
ICGC Data PortalCLDN23 
TCGA Data PortalCLDN23 
Broad Tumor PortalCLDN23
OASIS PortalCLDN23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLDN23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLDN23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLDN23
DgiDB (Drug Gene Interaction Database)CLDN23
DoCM (Curated mutations)CLDN23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLDN23 (select a term)
intoGenCLDN23
Cancer3DCLDN23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609203   
Orphanet
MedgenCLDN23
Genetic Testing Registry CLDN23
NextProtQ96B33 [Medical]
TSGene137075
GENETestsCLDN23
Huge Navigator CLDN23 [HugePedia]
snp3D : Map Gene to Disease137075
BioCentury BCIQCLDN23
ClinGenCLDN23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD137075
Chemical/Pharm GKB GenePA134961253
Clinical trialCLDN23
Miscellaneous
canSAR (ICR)CLDN23 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLDN23
EVEXCLDN23
GoPubMedCLDN23
iHOPCLDN23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:00:45 CET 2017

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