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CLDN24 (claudin 24)

Identity

Alias_namesCLDN21
claudin 21
Other alias
HGNC (Hugo) CLDN24
LocusID (NCBI) 100132463
Atlas_Id 61861
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 183321764 and ends at 183322426 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLDN24   37200
Cards
Entrez_Gene (NCBI)CLDN24  100132463  claudin 24
AliasesCLDN21
GeneCards (Weizmann)CLDN24
Ensembl hg19 (Hinxton)ENSG00000185758 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185758 [Gene_View]  chr4:183321764-183322426 [Contig_View]  CLDN24 [Vega]
ICGC DataPortalENSG00000185758
TCGA cBioPortalCLDN24
AceView (NCBI)CLDN24
Genatlas (Paris)CLDN24
WikiGenes100132463
SOURCE (Princeton)CLDN24
Genetics Home Reference (NIH)CLDN24
Genomic and cartography
GoldenPath hg38 (UCSC)CLDN24  -     chr4:183321764-183322426 -  4q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLDN24  -     4q35.1   [Description]    (hg19-Feb_2009)
EnsemblCLDN24 - 4q35.1 [CytoView hg19]  CLDN24 - 4q35.1 [CytoView hg38]
Mapping of homologs : NCBICLDN24 [Mapview hg19]  CLDN24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001185149
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLDN24
Cluster EST : UnigeneHs.727475 [ NCBI ]
CGAP (NCI)Hs.727475
Alternative Splicing GalleryENSG00000185758
Gene ExpressionCLDN24 [ NCBI-GEO ]   CLDN24 [ EBI - ARRAY_EXPRESS ]   CLDN24 [ SEEK ]   CLDN24 [ MEM ]
Gene Expression Viewer (FireBrowse)CLDN24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132463
GTEX Portal (Tissue expression)CLDN24
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NM45   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NM45  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NM45
Splice isoforms : SwissVarA6NM45
PhosPhoSitePlusA6NM45
Domaine pattern : Prosite (Expaxy)CLAUDIN (PS01346)   
Domains : Interpro (EBI)Claudin    Claudin_CS    PMP22/EMP/MP20/Claudin   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
Conserved Domain (NCBI)CLDN24
DMDM Disease mutations100132463
Blocks (Seattle)CLDN24
SuperfamilyA6NM45
Human Protein AtlasENSG00000185758
Peptide AtlasA6NM45
IPIIPI00967105   
Protein Interaction databases
DIP (DOE-UCLA)A6NM45
IntAct (EBI)A6NM45
FunCoupENSG00000185758
BioGRIDCLDN24
STRING (EMBL)CLDN24
ZODIACCLDN24
Ontologies - Pathways
QuickGOA6NM45
Ontology : AmiGOstructural molecule activity  plasma membrane  bicellular tight junction  integral component of membrane  
Ontology : EGO-EBIstructural molecule activity  plasma membrane  bicellular tight junction  integral component of membrane  
Pathways : KEGGCell adhesion molecules (CAMs)    Tight junction    Leukocyte transendothelial migration    Hepatitis C   
NDEx NetworkCLDN24
Atlas of Cancer Signalling NetworkCLDN24
Wikipedia pathwaysCLDN24
Orthology - Evolution
OrthoDB100132463
GeneTree (enSembl)ENSG00000185758
Phylogenetic Trees/Animal Genes : TreeFamCLDN24
HOVERGENA6NM45
HOGENOMA6NM45
Homologs : HomoloGeneCLDN24
Homology/Alignments : Family Browser (UCSC)CLDN24
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLDN24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLDN24
dbVarCLDN24
ClinVarCLDN24
1000_GenomesCLDN24 
Exome Variant ServerCLDN24
ExAC (Exome Aggregation Consortium)CLDN24 (select the gene name)
Genetic variants : HAPMAP100132463
Genomic Variants (DGV)CLDN24 [DGVbeta]
DECIPHERCLDN24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLDN24 
Mutations
ICGC Data PortalCLDN24 
TCGA Data PortalCLDN24 
Broad Tumor PortalCLDN24
OASIS PortalCLDN24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLDN24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLDN24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLDN24
DgiDB (Drug Gene Interaction Database)CLDN24
DoCM (Curated mutations)CLDN24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLDN24 (select a term)
intoGenCLDN24
Cancer3DCLDN24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLDN24
Genetic Testing Registry CLDN24
NextProtA6NM45 [Medical]
TSGene100132463
GENETestsCLDN24
Target ValidationCLDN24
Huge Navigator CLDN24 [HugePedia]
snp3D : Map Gene to Disease100132463
BioCentury BCIQCLDN24
ClinGenCLDN24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132463
Chemical/Pharm GKB GenePA165663373
Clinical trialCLDN24
Miscellaneous
canSAR (ICR)CLDN24 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLDN24
EVEXCLDN24
GoPubMedCLDN24
iHOPCLDN24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:53 CEST 2017

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