Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CLDN25 (claudin 25)

Identity

Other alias-
HGNC (Hugo) CLDN25
LocusID (NCBI) 644672
Atlas_Id 61862
Location 11q23.2  [Link to chromosome band 11q23]
Location_base_pair Starts at 113779796 and ends at 113780485 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLDN25   37218
Cards
Entrez_Gene (NCBI)CLDN25  644672  claudin 25
Aliases
GeneCards (Weizmann)CLDN25
Ensembl hg19 (Hinxton)ENSG00000228607 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228607 [Gene_View]  chr11:113779796-113780485 [Contig_View]  CLDN25 [Vega]
ICGC DataPortalENSG00000228607
TCGA cBioPortalCLDN25
AceView (NCBI)CLDN25
Genatlas (Paris)CLDN25
WikiGenes644672
SOURCE (Princeton)CLDN25
Genetics Home Reference (NIH)CLDN25
Genomic and cartography
GoldenPath hg38 (UCSC)CLDN25  -     chr11:113779796-113780485 +  11q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLDN25  -     11q23.2   [Description]    (hg19-Feb_2009)
EnsemblCLDN25 - 11q23.2 [CytoView hg19]  CLDN25 - 11q23.2 [CytoView hg38]
Mapping of homologs : NCBICLDN25 [Mapview hg19]  CLDN25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001101389
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLDN25
Cluster EST : UnigeneHs.705360 [ NCBI ]
CGAP (NCI)Hs.705360
Alternative Splicing GalleryENSG00000228607
Gene ExpressionCLDN25 [ NCBI-GEO ]   CLDN25 [ EBI - ARRAY_EXPRESS ]   CLDN25 [ SEEK ]   CLDN25 [ MEM ]
Gene Expression Viewer (FireBrowse)CLDN25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644672
GTEX Portal (Tissue expression)CLDN25
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JDP6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JDP6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JDP6
Splice isoforms : SwissVarC9JDP6
PhosPhoSitePlusC9JDP6
Domains : Interpro (EBI)Claudin    PMP22/EMP/MP20/Claudin   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
Conserved Domain (NCBI)CLDN25
DMDM Disease mutations644672
Blocks (Seattle)CLDN25
SuperfamilyC9JDP6
Human Protein AtlasENSG00000228607
Peptide AtlasC9JDP6
IPIIPI00737822   
Protein Interaction databases
DIP (DOE-UCLA)C9JDP6
IntAct (EBI)C9JDP6
FunCoupENSG00000228607
BioGRIDCLDN25
STRING (EMBL)CLDN25
ZODIACCLDN25
Ontologies - Pathways
QuickGOC9JDP6
Ontology : AmiGOstructural molecule activity  plasma membrane  bicellular tight junction  integral component of membrane  
Ontology : EGO-EBIstructural molecule activity  plasma membrane  bicellular tight junction  integral component of membrane  
Pathways : KEGGCell adhesion molecules (CAMs)    Tight junction    Leukocyte transendothelial migration    Hepatitis C   
NDEx NetworkCLDN25
Atlas of Cancer Signalling NetworkCLDN25
Wikipedia pathwaysCLDN25
Orthology - Evolution
OrthoDB644672
GeneTree (enSembl)ENSG00000228607
Phylogenetic Trees/Animal Genes : TreeFamCLDN25
HOVERGENC9JDP6
HOGENOMC9JDP6
Homologs : HomoloGeneCLDN25
Homology/Alignments : Family Browser (UCSC)CLDN25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLDN25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLDN25
dbVarCLDN25
ClinVarCLDN25
1000_GenomesCLDN25 
Exome Variant ServerCLDN25
ExAC (Exome Aggregation Consortium)CLDN25 (select the gene name)
Genetic variants : HAPMAP644672
Genomic Variants (DGV)CLDN25 [DGVbeta]
DECIPHERCLDN25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLDN25 
Mutations
ICGC Data PortalCLDN25 
TCGA Data PortalCLDN25 
Broad Tumor PortalCLDN25
OASIS PortalCLDN25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLDN25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLDN25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLDN25
DgiDB (Drug Gene Interaction Database)CLDN25
DoCM (Curated mutations)CLDN25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLDN25 (select a term)
intoGenCLDN25
Cancer3DCLDN25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLDN25
Genetic Testing Registry CLDN25
NextProtC9JDP6 [Medical]
TSGene644672
GENETestsCLDN25
Target ValidationCLDN25
Huge Navigator CLDN25 [HugePedia]
snp3D : Map Gene to Disease644672
BioCentury BCIQCLDN25
ClinGenCLDN25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644672
Chemical/Pharm GKB GenePA165543379
Clinical trialCLDN25
Miscellaneous
canSAR (ICR)CLDN25 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLDN25
EVEXCLDN25
GoPubMedCLDN25
iHOPCLDN25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:43:48 CEST 2017

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