Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CLDN3 (claudin 3)

Identity

Alias_namesC7orf1
CPETR2
Alias_symbol (synonym)RVP1
CPE-R2
HRVP1
Other alias
HGNC (Hugo) CLDN3
LocusID (NCBI) 1365
Atlas_Id 46346
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 73768997 and ends at 73770270 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLDN3   2045
Cards
Entrez_Gene (NCBI)CLDN3  1365  claudin 3
AliasesC7orf1; CPE-R2; CPETR2; HRVP1; 
RVP1
GeneCards (Weizmann)CLDN3
Ensembl hg19 (Hinxton)ENSG00000165215 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165215 [Gene_View]  chr7:73768997-73770270 [Contig_View]  CLDN3 [Vega]
ICGC DataPortalENSG00000165215
TCGA cBioPortalCLDN3
AceView (NCBI)CLDN3
Genatlas (Paris)CLDN3
WikiGenes1365
SOURCE (Princeton)CLDN3
Genetics Home Reference (NIH)CLDN3
Genomic and cartography
GoldenPath hg38 (UCSC)CLDN3  -     chr7:73768997-73770270 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLDN3  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblCLDN3 - 7q11.23 [CytoView hg19]  CLDN3 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBICLDN3 [Mapview hg19]  CLDN3 [Mapview hg38]
OMIM602910   
Gene and transcription
Genbank (Entrez)AB000714 AK313276 BC009083 BC016056 BM764277
RefSeq transcript (Entrez)NM_001306
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLDN3
Cluster EST : UnigeneHs.647023 [ NCBI ]
CGAP (NCI)Hs.647023
Alternative Splicing GalleryENSG00000165215
Gene ExpressionCLDN3 [ NCBI-GEO ]   CLDN3 [ EBI - ARRAY_EXPRESS ]   CLDN3 [ SEEK ]   CLDN3 [ MEM ]
Gene Expression Viewer (FireBrowse)CLDN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1365
GTEX Portal (Tissue expression)CLDN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15551   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15551  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15551
Splice isoforms : SwissVarO15551
PhosPhoSitePlusO15551
Domaine pattern : Prosite (Expaxy)CLAUDIN (PS01346)   
Domains : Interpro (EBI)Claudin    Claudin3    Claudin_CS    PMP22/EMP/MP20/Claudin   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
Conserved Domain (NCBI)CLDN3
DMDM Disease mutations1365
Blocks (Seattle)CLDN3
SuperfamilyO15551
Human Protein AtlasENSG00000165215
Peptide AtlasO15551
HPRD04219
IPIIPI00007364   
Protein Interaction databases
DIP (DOE-UCLA)O15551
IntAct (EBI)O15551
FunCoupENSG00000165215
BioGRIDCLDN3
STRING (EMBL)CLDN3
ZODIACCLDN3
Ontologies - Pathways
QuickGOO15551
Ontology : AmiGOresponse to hypoxia  epithelial cell morphogenesis  transmembrane signaling receptor activity  structural molecule activity  cytoplasm  integral component of plasma membrane  bicellular tight junction  bicellular tight junction  signal transduction  integral component of membrane  apicolateral plasma membrane  lateral plasma membrane  calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules  identical protein binding  response to ethanol  protein homooligomerization  protein heterooligomerization  extracellular exosome  bicellular tight junction assembly  
Ontology : EGO-EBIresponse to hypoxia  epithelial cell morphogenesis  transmembrane signaling receptor activity  structural molecule activity  cytoplasm  integral component of plasma membrane  bicellular tight junction  bicellular tight junction  signal transduction  integral component of membrane  apicolateral plasma membrane  lateral plasma membrane  calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules  identical protein binding  response to ethanol  protein homooligomerization  protein heterooligomerization  extracellular exosome  bicellular tight junction assembly  
Pathways : KEGGCell adhesion molecules (CAMs)    Tight junction    Leukocyte transendothelial migration    Hepatitis C   
NDEx NetworkCLDN3
Atlas of Cancer Signalling NetworkCLDN3
Wikipedia pathwaysCLDN3
Orthology - Evolution
OrthoDB1365
GeneTree (enSembl)ENSG00000165215
Phylogenetic Trees/Animal Genes : TreeFamCLDN3
HOVERGENO15551
HOGENOMO15551
Homologs : HomoloGeneCLDN3
Homology/Alignments : Family Browser (UCSC)CLDN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLDN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLDN3
dbVarCLDN3
ClinVarCLDN3
1000_GenomesCLDN3 
Exome Variant ServerCLDN3
ExAC (Exome Aggregation Consortium)CLDN3 (select the gene name)
Genetic variants : HAPMAP1365
Genomic Variants (DGV)CLDN3 [DGVbeta]
DECIPHERCLDN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLDN3 
Mutations
ICGC Data PortalCLDN3 
TCGA Data PortalCLDN3 
Broad Tumor PortalCLDN3
OASIS PortalCLDN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLDN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLDN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLDN3
DgiDB (Drug Gene Interaction Database)CLDN3
DoCM (Curated mutations)CLDN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLDN3 (select a term)
intoGenCLDN3
Cancer3DCLDN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602910   
Orphanet
MedgenCLDN3
Genetic Testing Registry CLDN3
NextProtO15551 [Medical]
TSGene1365
GENETestsCLDN3
Target ValidationCLDN3
Huge Navigator CLDN3 [HugePedia]
snp3D : Map Gene to Disease1365
BioCentury BCIQCLDN3
ClinGenCLDN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1365
Chemical/Pharm GKB GenePA26571
Clinical trialCLDN3
Miscellaneous
canSAR (ICR)CLDN3 (select the gene name)
Probes
Litterature
PubMed88 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLDN3
EVEXCLDN3
GoPubMedCLDN3
iHOPCLDN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:58:02 CEST 2017

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