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CLDN34 (claudin 34)

Identity

Other aliasClaudin-34
HGNC (Hugo) CLDN34
LocusID (NCBI) 100288814
Atlas_Id 76564
Location Xp22.2  [Link to chromosome band Xp22]
Location_base_pair Starts at 9967358 and ends at 9968002 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLDN34   51259
Cards
Entrez_Gene (NCBI)CLDN34  100288814  claudin 34
AliasesClaudin-34
GeneCards (Weizmann)CLDN34
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:9967358-9968002 [Contig_View]  CLDN34 [Vega]
TCGA cBioPortalCLDN34
AceView (NCBI)CLDN34
Genatlas (Paris)CLDN34
WikiGenes100288814
SOURCE (Princeton)CLDN34
Genetics Home Reference (NIH)CLDN34
Genomic and cartography
GoldenPath hg38 (UCSC)CLDN34  -     chrX:9967358-9968002 +  Xp22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLDN34  -     Xp22.2   [Description]    (hg19-Feb_2009)
EnsemblCLDN34 - Xp22.2 [CytoView hg19]  CLDN34 - Xp22.2 [CytoView hg38]
Mapping of homologs : NCBICLDN34 [Mapview hg19]  CLDN34 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001195081
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLDN34
Cluster EST : UnigeneHs.722001 [ NCBI ]
CGAP (NCI)Hs.722001
Gene ExpressionCLDN34 [ NCBI-GEO ]   CLDN34 [ EBI - ARRAY_EXPRESS ]   CLDN34 [ SEEK ]   CLDN34 [ MEM ]
Gene Expression Viewer (FireBrowse)CLDN34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100288814
GTEX Portal (Tissue expression)CLDN34
Protein : pattern, domain, 3D structure
UniProt/SwissProtH7C241   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH7C241  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH7C241
Splice isoforms : SwissVarH7C241
PhosPhoSitePlusH7C241
Domains : Interpro (EBI)Claudin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CLDN34
DMDM Disease mutations100288814
Blocks (Seattle)CLDN34
SuperfamilyH7C241
Peptide AtlasH7C241
IPIIPI00937196   
Protein Interaction databases
DIP (DOE-UCLA)H7C241
IntAct (EBI)H7C241
BioGRIDCLDN34
STRING (EMBL)CLDN34
ZODIACCLDN34
Ontologies - Pathways
QuickGOH7C241
Ontology : AmiGOstructural molecule activity  plasma membrane  bicellular tight junction  integral component of membrane  
Ontology : EGO-EBIstructural molecule activity  plasma membrane  bicellular tight junction  integral component of membrane  
NDEx NetworkCLDN34
Atlas of Cancer Signalling NetworkCLDN34
Wikipedia pathwaysCLDN34
Orthology - Evolution
OrthoDB100288814
Phylogenetic Trees/Animal Genes : TreeFamCLDN34
HOVERGENH7C241
HOGENOMH7C241
Homologs : HomoloGeneCLDN34
Homology/Alignments : Family Browser (UCSC)CLDN34
Gene fusions - Rearrangements
Tumor Fusion PortalCLDN34
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLDN34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLDN34
dbVarCLDN34
ClinVarCLDN34
1000_GenomesCLDN34 
Exome Variant ServerCLDN34
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP100288814
Genomic Variants (DGV)CLDN34 [DGVbeta]
DECIPHERCLDN34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLDN34 
Mutations
ICGC Data PortalCLDN34 
TCGA Data PortalCLDN34 
Broad Tumor PortalCLDN34
OASIS PortalCLDN34 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCLDN34
BioMutasearch CLDN34
DgiDB (Drug Gene Interaction Database)CLDN34
DoCM (Curated mutations)CLDN34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLDN34 (select a term)
intoGenCLDN34
Cancer3DCLDN34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCLDN34
MedgenCLDN34
Genetic Testing Registry CLDN34
NextProtH7C241 [Medical]
TSGene100288814
GENETestsCLDN34
Target ValidationCLDN34
Huge Navigator CLDN34 [HugePedia]
snp3D : Map Gene to Disease100288814
BioCentury BCIQCLDN34
ClinGenCLDN34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288814
Clinical trialCLDN34
Miscellaneous
canSAR (ICR)CLDN34 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLDN34
EVEXCLDN34
GoPubMedCLDN34
iHOPCLDN34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:24:18 CET 2017

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