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CLDND1 (claudin domain containing 1)

Identity

Alias_namesC3orf4
chromosome 3 open reading frame 4
Other aliasGENX-3745
HGNC (Hugo) CLDND1
LocusID (NCBI) 56650
Atlas_Id 47585
Location 3q11.2  [Link to chromosome band 3q11]
Location_base_pair Starts at 98234317 and ends at 98241910 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATP13A2 (1p36.13) / CLDND1 (3q11.2)CLDND1 (3q11.2) / CLDND1 (3q11.2)GPCPD1 (20p12.3) / CLDND1 (3q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLDND1   1322
Cards
Entrez_Gene (NCBI)CLDND1  56650  claudin domain containing 1
AliasesC3orf4; GENX-3745
GeneCards (Weizmann)CLDND1
Ensembl hg19 (Hinxton)ENSG00000080822 [Gene_View]  chr3:98234317-98241910 [Contig_View]  CLDND1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000080822 [Gene_View]  chr3:98234317-98241910 [Contig_View]  CLDND1 [Vega]
ICGC DataPortalENSG00000080822
TCGA cBioPortalCLDND1
AceView (NCBI)CLDND1
Genatlas (Paris)CLDND1
WikiGenes56650
SOURCE (Princeton)CLDND1
Genetics Home Reference (NIH)CLDND1
Genomic and cartography
GoldenPath hg19 (UCSC)CLDND1  -     chr3:98234317-98241910 -  3q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLDND1  -     3q11.2   [Description]    (hg38-Dec_2013)
EnsemblCLDND1 - 3q11.2 [CytoView hg19]  CLDND1 - 3q11.2 [CytoView hg38]
Mapping of homologs : NCBICLDND1 [Mapview hg19]  CLDND1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA811441 AF161522 AJ270952 AK075367 AL080097
RefSeq transcript (Entrez)NM_001040181 NM_001040182 NM_001040183 NM_001040184 NM_001040199 NM_001040200 NM_019895
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)CLDND1
Cluster EST : UnigeneHs.720106 [ NCBI ]
CGAP (NCI)Hs.720106
Alternative Splicing GalleryENSG00000080822
Gene ExpressionCLDND1 [ NCBI-GEO ]   CLDND1 [ EBI - ARRAY_EXPRESS ]   CLDND1 [ SEEK ]   CLDND1 [ MEM ]
Gene Expression Viewer (FireBrowse)CLDND1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56650
GTEX Portal (Tissue expression)CLDND1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY35
Splice isoforms : SwissVarQ9NY35
PhosPhoSitePlusQ9NY35
Domains : Interpro (EBI)PMP22/EMP/MP20/Claudin   
Domain families : Pfam (Sanger)Claudin_2 (PF13903)   
Domain families : Pfam (NCBI)pfam13903   
Conserved Domain (NCBI)CLDND1
DMDM Disease mutations56650
Blocks (Seattle)CLDND1
SuperfamilyQ9NY35
Human Protein AtlasENSG00000080822
Peptide AtlasQ9NY35
HPRD12822
IPIIPI00072743   IPI00746431   IPI00965436   IPI00965601   IPI00968290   IPI00965158   IPI00967592   IPI00966842   IPI00744006   IPI00848208   IPI00965901   IPI00968068   IPI00966857   IPI00964928   IPI00966601   IPI00793116   IPI00554568   IPI00967814   IPI00965136   IPI00792576   IPI00795658   
Protein Interaction databases
DIP (DOE-UCLA)Q9NY35
IntAct (EBI)Q9NY35
FunCoupENSG00000080822
BioGRIDCLDND1
STRING (EMBL)CLDND1
ZODIACCLDND1
Ontologies - Pathways
QuickGOQ9NY35
Ontology : AmiGOcell surface  integral component of membrane  
Ontology : EGO-EBIcell surface  integral component of membrane  
NDEx NetworkCLDND1
Atlas of Cancer Signalling NetworkCLDND1
Wikipedia pathwaysCLDND1
Orthology - Evolution
OrthoDB56650
GeneTree (enSembl)ENSG00000080822
Phylogenetic Trees/Animal Genes : TreeFamCLDND1
HOVERGENQ9NY35
HOGENOMQ9NY35
Homologs : HomoloGeneCLDND1
Homology/Alignments : Family Browser (UCSC)CLDND1
Gene fusions - Rearrangements
Fusion Cancer (Beijing)GPCPD1 [20p12.3]  -  CLDND1 [3q11.2]  [FUSC000540]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLDND1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLDND1
dbVarCLDND1
ClinVarCLDND1
1000_GenomesCLDND1 
Exome Variant ServerCLDND1
ExAC (Exome Aggregation Consortium)CLDND1 (select the gene name)
Genetic variants : HAPMAP56650
Genomic Variants (DGV)CLDND1 [DGVbeta]
DECIPHER (Syndromes)3:98234317-98241910  ENSG00000080822
CONAN: Copy Number AnalysisCLDND1 
Mutations
ICGC Data PortalCLDND1 
TCGA Data PortalCLDND1 
Broad Tumor PortalCLDND1
OASIS PortalCLDND1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLDND1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLDND1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLDND1
DgiDB (Drug Gene Interaction Database)CLDND1
DoCM (Curated mutations)CLDND1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLDND1 (select a term)
intoGenCLDND1
Cancer3DCLDND1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLDND1
Genetic Testing Registry CLDND1
NextProtQ9NY35 [Medical]
TSGene56650
GENETestsCLDND1
Huge Navigator CLDND1 [HugePedia]
snp3D : Map Gene to Disease56650
BioCentury BCIQCLDND1
ClinGenCLDND1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56650
Chemical/Pharm GKB GenePA25901
Clinical trialCLDND1
Miscellaneous
canSAR (ICR)CLDND1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLDND1
EVEXCLDND1
GoPubMedCLDND1
iHOPCLDND1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:56:48 CEST 2017

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