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CLDND2 (claudin domain containing 2)

Identity

Alias_symbol (synonym)MGC33839
Other alias-
HGNC (Hugo) CLDND2
LocusID (NCBI) 125875
Atlas_Id 61863
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 51367098 and ends at 51369003 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLDND2   28511
Cards
Entrez_Gene (NCBI)CLDND2  125875  claudin domain containing 2
Aliases
GeneCards (Weizmann)CLDND2
Ensembl hg19 (Hinxton)ENSG00000160318 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160318 [Gene_View]  chr19:51367098-51369003 [Contig_View]  CLDND2 [Vega]
ICGC DataPortalENSG00000160318
TCGA cBioPortalCLDND2
AceView (NCBI)CLDND2
Genatlas (Paris)CLDND2
WikiGenes125875
SOURCE (Princeton)CLDND2
Genetics Home Reference (NIH)CLDND2
Genomic and cartography
GoldenPath hg38 (UCSC)CLDND2  -     chr19:51367098-51369003 -  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLDND2  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblCLDND2 - 19q13.41 [CytoView hg19]  CLDND2 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBICLDND2 [Mapview hg19]  CLDND2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC029518 DQ890968 DQ894142
RefSeq transcript (Entrez)NM_152353
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLDND2
Cluster EST : UnigeneHs.720536 [ NCBI ]
CGAP (NCI)Hs.720536
Alternative Splicing GalleryENSG00000160318
Gene ExpressionCLDND2 [ NCBI-GEO ]   CLDND2 [ EBI - ARRAY_EXPRESS ]   CLDND2 [ SEEK ]   CLDND2 [ MEM ]
Gene Expression Viewer (FireBrowse)CLDND2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125875
GTEX Portal (Tissue expression)CLDND2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHS1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHS1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHS1
Splice isoforms : SwissVarQ8NHS1
PhosPhoSitePlusQ8NHS1
Domaine pattern : Prosite (Expaxy)PMP22_1 (PS01221)   
Domains : Interpro (EBI)PMP22/EMP/MP20/Claudin    PMP22_EMP_MP20   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
Conserved Domain (NCBI)CLDND2
DMDM Disease mutations125875
Blocks (Seattle)CLDND2
SuperfamilyQ8NHS1
Human Protein AtlasENSG00000160318
Peptide AtlasQ8NHS1
HPRD14574
IPIIPI00169309   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHS1
IntAct (EBI)Q8NHS1
FunCoupENSG00000160318
BioGRIDCLDND2
STRING (EMBL)CLDND2
ZODIACCLDND2
Ontologies - Pathways
QuickGOQ8NHS1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkCLDND2
Atlas of Cancer Signalling NetworkCLDND2
Wikipedia pathwaysCLDND2
Orthology - Evolution
OrthoDB125875
GeneTree (enSembl)ENSG00000160318
Phylogenetic Trees/Animal Genes : TreeFamCLDND2
HOVERGENQ8NHS1
HOGENOMQ8NHS1
Homologs : HomoloGeneCLDND2
Homology/Alignments : Family Browser (UCSC)CLDND2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLDND2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLDND2
dbVarCLDND2
ClinVarCLDND2
1000_GenomesCLDND2 
Exome Variant ServerCLDND2
ExAC (Exome Aggregation Consortium)CLDND2 (select the gene name)
Genetic variants : HAPMAP125875
Genomic Variants (DGV)CLDND2 [DGVbeta]
DECIPHERCLDND2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLDND2 
Mutations
ICGC Data PortalCLDND2 
TCGA Data PortalCLDND2 
Broad Tumor PortalCLDND2
OASIS PortalCLDND2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLDND2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLDND2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLDND2
DgiDB (Drug Gene Interaction Database)CLDND2
DoCM (Curated mutations)CLDND2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLDND2 (select a term)
intoGenCLDND2
Cancer3DCLDND2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLDND2
Genetic Testing Registry CLDND2
NextProtQ8NHS1 [Medical]
TSGene125875
GENETestsCLDND2
Target ValidationCLDND2
Huge Navigator CLDND2 [HugePedia]
snp3D : Map Gene to Disease125875
BioCentury BCIQCLDND2
ClinGenCLDND2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125875
Chemical/Pharm GKB GenePA144596447
Clinical trialCLDND2
Miscellaneous
canSAR (ICR)CLDND2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLDND2
EVEXCLDND2
GoPubMedCLDND2
iHOPCLDND2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:48 CEST 2017

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