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CLEC10A (C-type lectin domain family 10, member A)

Identity

Other namesCD301
CLECSF13
CLECSF14
HML
HML2
MGL
HGNC (Hugo) CLEC10A
LocusID (NCBI) 10462
Location 17p13.1
Location_base_pair Starts at 6977856 and ends at 6983600 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CLEC10A   16916
Cards
Entrez_Gene (NCBI)CLEC10A  10462  C-type lectin domain family 10, member A
GeneCards (Weizmann)CLEC10A
Ensembl (Hinxton)ENSG00000132514 [Gene_View]  chr17:6977856-6983600 [Contig_View]  CLEC10A [Vega]
AceView (NCBI)CLEC10A
Genatlas (Paris)CLEC10A
WikiGenes10462
SOURCE (Princeton)NM_006344 NM_182906
Genomic and cartography
GoldenPath (UCSC)CLEC10A  -  17p13.1   chr17:6977856-6983600 -  17p13.1   [Description]    (hg19-Feb_2009)
EnsemblCLEC10A - 17p13.1 [CytoView]
Mapping of homologs : NCBICLEC10A [Mapview]
OMIM605999   
Gene and transcription
Genbank (Entrez)AK291975 AK292363 AL546075 BC027858 BC039011
RefSeq transcript (Entrez)NM_006344 NM_182906
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_029878 NT_010718 NW_001838403 NW_004929405
Consensus coding sequences : CCDS (NCBI)CLEC10A
Cluster EST : UnigeneHs.54403 [ NCBI ]
CGAP (NCI)Hs.54403
Alternative Splicing : Fast-db (Paris)GSHG0013039
Alternative Splicing GalleryENSG00000132514
Gene ExpressionCLEC10A [ NCBI-GEO ]     CLEC10A [ SEEK ]   CLEC10A [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUN9 (Uniprot)
NextProtQ8IUN9  [Medical]
With graphics : InterProQ8IUN9
Splice isoforms : SwissVarQ8IUN9 (Swissvar)
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_CS    C-type_lectin_fold    Lectin_N   
Related proteins : CluSTrQ8IUN9
Domain families : Pfam (Sanger)Lectin_C (PF00059)    Lectin_N (PF03954)   
Domain families : Pfam (NCBI)pfam00059    pfam03954   
Domain families : Smart (EMBL)CLECT (SM00034)  
DMDM Disease mutations10462
Blocks (Seattle)Q8IUN9
Human Protein AtlasENSG00000132514
Peptide AtlasQ8IUN9
HPRD12076
IPIIPI00216794   IPI00337367   IPI00448891   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUN9
IntAct (EBI)Q8IUN9
FunCoupENSG00000132514
BioGRIDCLEC10A
InParanoidQ8IUN9
Interologous Interaction database Q8IUN9
IntegromeDBCLEC10A
STRING (EMBL)CLEC10A
Ontologies - Pathways
Ontology : AmiGOplasma membrane  endocytosis  integral to membrane  carbohydrate binding  innate immune response  
Ontology : EGO-EBIplasma membrane  endocytosis  integral to membrane  carbohydrate binding  innate immune response  
REACTOMECLEC10A
Protein Interaction DatabaseCLEC10A
Wikipedia pathwaysCLEC10A
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CLEC10A
SNP (GeneSNP Utah)CLEC10A
SNP : HGBaseCLEC10A
Genetic variants : HAPMAPCLEC10A
1000_GenomesCLEC10A 
ICGC programENSG00000132514 
Somatic Mutations in Cancer : COSMICCLEC10A 
CONAN: Copy Number AnalysisCLEC10A 
Mutations and Diseases : HGMDCLEC10A
OMIM605999   
GENETestsCLEC10A
Disease Genetic AssociationCLEC10A
Huge Navigator CLEC10A [HugePedia]  CLEC10A [HugeCancerGEM]
Genomic VariantsCLEC10A  CLEC10A [DGVbeta]
Exome VariantCLEC10A
dbVarCLEC10A
ClinVarCLEC10A
snp3D : Map Gene to Disease10462
General knowledge
Homologs : HomoloGeneCLEC10A
Homology/Alignments : Family Browser (UCSC)CLEC10A
Phylogenetic Trees/Animal Genes : TreeFamCLEC10A
Chemical/Protein Interactions : CTD10462
Chemical/Pharm GKB GenePA134975011
Clinical trialCLEC10A
Cancer Resource (Charite)ENSG00000132514
Other databases
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
CoreMineCLEC10A
iHOPCLEC10A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 16:45:28 CEST 2014

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