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CLEC10A (C-type lectin domain family 10, member A)

Identity

Other namesCD301
CLECSF13
CLECSF14
HML
HML2
MGL
HGNC (Hugo) CLEC10A
LocusID (NCBI) 10462
Location 17p13.1
Location_base_pair Starts at 6977856 and ends at 6983600 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CLEC10A   16916
Entrez_Gene (NCBI)CLEC10A  10462  C-type lectin domain family 10, member A
Cards
GeneCards (Weizmann)CLEC10A
Ensembl (Hinxton)ENSG00000132514 [Gene_View]  chr17:6977856-6983600 [Contig_View]  CLEC10A [Vega]
AceView (NCBI)CLEC10A
Genatlas (Paris)CLEC10A
SOURCE (Stanford)NM_006344 NM_182906
Genomic and cartography
GoldenPath (UCSC)CLEC10A  -  17p13.1   chr17:6977856-6983600 -  17p13.1   [Description]    (hg19-Feb_2009)
EnsemblCLEC10A - 17p13.1 [CytoView]
Mapping of homologs : NCBICLEC10A [Mapview]
OMIM605999   
Gene and transcription
Genbank (Entrez)AK291975 AK292363 AL546075 BC027858 BC039011
RefSeq transcript (SRS)NM_006344 NM_182906
RefSeq transcript (Entrez)NM_006344 NM_182906
RefSeq genomic (SRS)AC_000149 NC_000017 NC_018928 NG_029878 NT_010718 NW_001838403 NW_004078090
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_029878 NT_010718 NW_001838403 NW_004078090
Consensus coding sequences : CCDS (NCBI)CLEC10A
Cluster EST : UnigeneHs.54403 [ SRS ] Hs.54403 [ NCBI ]
CGAP (NCI)Hs.54403
Alternative Splicing : Fast-db (Paris)GSHG0013039
Alternative Splicing GalleryENSG00000132514
Gene ExpressionCLEC10A [ NCBI-GEO ]   CLEC10A [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUN9 (SRS) Q8IUN9 (Uniprot)
NextProtQ8IUN9
With graphics : InterProQ8IUN9
Splice isoforms : SwissVarQ8IUN9(Swissvar)
Domaine pattern : Prosite (SRS)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (SRS)C-type_lectin    C-type_lectin-like    C-type_lectin_CS    C-type_lectin_fold    Lectin_N   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_CS    C-type_lectin_fold    Lectin_N   
Related proteins : CluSTrQ8IUN9
Domain families : Pfam (SRS)Lectin_C (PF00059)    Lectin_N (PF03954)   
Domain families : Pfam (Sanger)Lectin_C (PF00059)    Lectin_N (PF03954)   
Domain families : Pfam (NCBI)pfam00059    pfam03954   
Domain families : Smart (EMBL)CLECT (SM00034)  
DMDM10462
Blocks (Seattle)Q8IUN9
Human Protein AtlasENSG00000132514
HPRD12076
IPIIPI00216794   IPI00337367   IPI00448891   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUN9
IntAct (EBI)Q8IUN9
FunCoupENSG00000132514
REACTOMECLEC10A
Protein Interaction Database10462
BioGRIDCLEC10A
InParanoidQ8IUN9
Interologous Interaction database Q8IUN9
IntegromeDBCLEC10A
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CLEC10A
SNP (GeneSNP Utah)CLEC10A
SNP : HGBaseCLEC10A
Genetic variants : HAPMAPCLEC10A
Somatic Mutations in Cancer : COSMICCLEC10A 
CONAN: Copy Number AnalysisCLEC10A 
Mutations and Diseases : HGMDCLEC10A
OMIM605999   
GENETests605999   
Disease Genetic AssociationCLEC10A
Huge Navigator CLEC10A [HugePedia]  CLEC10A [HugeCancerGEM]
Genomic VariantsCLEC10A  CLEC10A [DGVbeta]
snp3D : Map Gene to Disease10462
General knowledge
Homologs : HomoloGeneCLEC10A
Homology/Alignments : Family Browser (UCSC)CLEC10A
Phylogenetic Trees/Animal Genes : TreeFamCLEC10A
Chemical/Protein Interactions : CTD10462
Chemical/Pharm GKB GenePA134975011
Clinical trialCLEC10A
Cancer Resource (Charite)ENSG00000132514
Ontology : AmiGOplasma membrane  endocytosis  integral to membrane  carbohydrate binding  innate immune response  
Ontology : EGO-EBIplasma membrane  endocytosis  integral to membrane  carbohydrate binding  innate immune response  
Other databases
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
PubGeneCLEC10A
iHOPCLEC10A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:20:42 CEST 2013
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