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CLEC10A (C-type lectin domain family 10 member A)

Identity

Alias_namesCLECSF13
CLECSF14
C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)
C-type lectin domain family 10, member A
Alias_symbol (synonym)HML2
HML
CD301
HGNC (Hugo) CLEC10A
LocusID (NCBI) 10462
Atlas_Id 40100
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 6977856 and ends at 6983600 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC10A   16916
Cards
Entrez_Gene (NCBI)CLEC10A  10462  C-type lectin domain family 10 member A
AliasesCD301; CLECSF13; CLECSF14; HML; 
HML2; MGL
GeneCards (Weizmann)CLEC10A
Ensembl hg19 (Hinxton)ENSG00000132514 [Gene_View]  chr17:6977856-6983600 [Contig_View]  CLEC10A [Vega]
Ensembl hg38 (Hinxton)ENSG00000132514 [Gene_View]  chr17:6977856-6983600 [Contig_View]  CLEC10A [Vega]
ICGC DataPortalENSG00000132514
TCGA cBioPortalCLEC10A
AceView (NCBI)CLEC10A
Genatlas (Paris)CLEC10A
WikiGenes10462
SOURCE (Princeton)CLEC10A
Genetics Home Reference (NIH)CLEC10A
Genomic and cartography
GoldenPath hg19 (UCSC)CLEC10A  -     chr17:6977856-6983600 -  17p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLEC10A  -     17p13.1   [Description]    (hg38-Dec_2013)
EnsemblCLEC10A - 17p13.1 [CytoView hg19]  CLEC10A - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBICLEC10A [Mapview hg19]  CLEC10A [Mapview hg38]
OMIM605999   
Gene and transcription
Genbank (Entrez)AK291975 AK292363 AL546075 BC027858 BC039011
RefSeq transcript (Entrez)NM_006344 NM_182906
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_029878 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)CLEC10A
Cluster EST : UnigeneHs.54403 [ NCBI ]
CGAP (NCI)Hs.54403
Alternative Splicing GalleryENSG00000132514
Gene ExpressionCLEC10A [ NCBI-GEO ]   CLEC10A [ EBI - ARRAY_EXPRESS ]   CLEC10A [ SEEK ]   CLEC10A [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC10A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10462
GTEX Portal (Tissue expression)CLEC10A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUN9
Splice isoforms : SwissVarQ8IUN9
PhosPhoSitePlusQ8IUN9
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_CS    C-type_lectin_fold    Lectin_N   
Domain families : Pfam (Sanger)Lectin_C (PF00059)    Lectin_N (PF03954)   
Domain families : Pfam (NCBI)pfam00059    pfam03954   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC10A
DMDM Disease mutations10462
Blocks (Seattle)CLEC10A
SuperfamilyQ8IUN9
Human Protein AtlasENSG00000132514
Peptide AtlasQ8IUN9
HPRD12076
IPIIPI00216794   IPI00337367   IPI00448891   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUN9
IntAct (EBI)Q8IUN9
FunCoupENSG00000132514
BioGRIDCLEC10A
STRING (EMBL)CLEC10A
ZODIACCLEC10A
Ontologies - Pathways
QuickGOQ8IUN9
Ontology : AmiGOadaptive immune response  plasma membrane  endocytosis  integral component of membrane  carbohydrate binding  innate immune response  
Ontology : EGO-EBIadaptive immune response  plasma membrane  endocytosis  integral component of membrane  carbohydrate binding  innate immune response  
NDEx NetworkCLEC10A
Atlas of Cancer Signalling NetworkCLEC10A
Wikipedia pathwaysCLEC10A
Orthology - Evolution
OrthoDB10462
GeneTree (enSembl)ENSG00000132514
Phylogenetic Trees/Animal Genes : TreeFamCLEC10A
HOVERGENQ8IUN9
HOGENOMQ8IUN9
Homologs : HomoloGeneCLEC10A
Homology/Alignments : Family Browser (UCSC)CLEC10A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC10A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC10A
dbVarCLEC10A
ClinVarCLEC10A
1000_GenomesCLEC10A 
Exome Variant ServerCLEC10A
ExAC (Exome Aggregation Consortium)CLEC10A (select the gene name)
Genetic variants : HAPMAP10462
Genomic Variants (DGV)CLEC10A [DGVbeta]
DECIPHER (Syndromes)17:6977856-6983600  ENSG00000132514
CONAN: Copy Number AnalysisCLEC10A 
Mutations
ICGC Data PortalCLEC10A 
TCGA Data PortalCLEC10A 
Broad Tumor PortalCLEC10A
OASIS PortalCLEC10A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC10A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC10A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC10A
DgiDB (Drug Gene Interaction Database)CLEC10A
DoCM (Curated mutations)CLEC10A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC10A (select a term)
intoGenCLEC10A
Cancer3DCLEC10A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605999   
Orphanet
MedgenCLEC10A
Genetic Testing Registry CLEC10A
NextProtQ8IUN9 [Medical]
TSGene10462
GENETestsCLEC10A
Huge Navigator CLEC10A [HugePedia]
snp3D : Map Gene to Disease10462
BioCentury BCIQCLEC10A
ClinGenCLEC10A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10462
Chemical/Pharm GKB GenePA134975011
Clinical trialCLEC10A
Miscellaneous
canSAR (ICR)CLEC10A (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC10A
EVEXCLEC10A
GoPubMedCLEC10A
iHOPCLEC10A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Nov 18 19:34:08 CET 2016

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