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CLEC11A (C-type lectin domain family 11 member A)

Identity

Alias_namesSCGF
stem cell growth factor; lymphocyte secreted C-type lectin
C-type lectin domain family 11, member A
Alias_symbol (synonym)P47
LSLCL
CLECSF3
Other alias
HGNC (Hugo) CLEC11A
LocusID (NCBI) 6320
Atlas_Id 52572
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 51226605 and ends at 51228981 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC11A   10576
Cards
Entrez_Gene (NCBI)CLEC11A  6320  C-type lectin domain family 11 member A
AliasesCLECSF3; LSLCL; P47; SCGF
GeneCards (Weizmann)CLEC11A
Ensembl hg19 (Hinxton)ENSG00000105472 [Gene_View]  chr19:51226605-51228981 [Contig_View]  CLEC11A [Vega]
Ensembl hg38 (Hinxton)ENSG00000105472 [Gene_View]  chr19:51226605-51228981 [Contig_View]  CLEC11A [Vega]
ICGC DataPortalENSG00000105472
TCGA cBioPortalCLEC11A
AceView (NCBI)CLEC11A
Genatlas (Paris)CLEC11A
WikiGenes6320
SOURCE (Princeton)CLEC11A
Genetics Home Reference (NIH)CLEC11A
Genomic and cartography
GoldenPath hg19 (UCSC)CLEC11A  -     chr19:51226605-51228981 +  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLEC11A  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblCLEC11A - 19q13.33 [CytoView hg19]  CLEC11A - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBICLEC11A [Mapview hg19]  CLEC11A [Mapview hg38]
OMIM604713   
Gene and transcription
Genbank (Entrez)AB009244 AF020044 AK314141 AY870345 BC005810
RefSeq transcript (Entrez)NM_002975
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)CLEC11A
Cluster EST : UnigeneHs.512680 [ NCBI ]
CGAP (NCI)Hs.512680
Alternative Splicing GalleryENSG00000105472
Gene ExpressionCLEC11A [ NCBI-GEO ]   CLEC11A [ EBI - ARRAY_EXPRESS ]   CLEC11A [ SEEK ]   CLEC11A [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC11A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6320
GTEX Portal (Tissue expression)CLEC11A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y240   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y240  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y240
Splice isoforms : SwissVarQ9Y240
PhosPhoSitePlusQ9Y240
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_CS    C-type_lectin_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC11A
DMDM Disease mutations6320
Blocks (Seattle)CLEC11A
SuperfamilyQ9Y240
Human Protein AtlasENSG00000105472
Peptide AtlasQ9Y240
HPRD05277
IPIIPI00033466   IPI00807609   IPI00941660   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y240
IntAct (EBI)Q9Y240
FunCoupENSG00000105472
BioGRIDCLEC11A
STRING (EMBL)CLEC11A
ZODIACCLEC11A
Ontologies - Pathways
QuickGOQ9Y240
Ontology : AmiGOextracellular region  extracellular space  cytoplasm  growth factor activity  positive regulation of cell proliferation  carbohydrate binding  
Ontology : EGO-EBIextracellular region  extracellular space  cytoplasm  growth factor activity  positive regulation of cell proliferation  carbohydrate binding  
NDEx NetworkCLEC11A
Atlas of Cancer Signalling NetworkCLEC11A
Wikipedia pathwaysCLEC11A
Orthology - Evolution
OrthoDB6320
GeneTree (enSembl)ENSG00000105472
Phylogenetic Trees/Animal Genes : TreeFamCLEC11A
HOVERGENQ9Y240
HOGENOMQ9Y240
Homologs : HomoloGeneCLEC11A
Homology/Alignments : Family Browser (UCSC)CLEC11A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC11A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC11A
dbVarCLEC11A
ClinVarCLEC11A
1000_GenomesCLEC11A 
Exome Variant ServerCLEC11A
ExAC (Exome Aggregation Consortium)CLEC11A (select the gene name)
Genetic variants : HAPMAP6320
Genomic Variants (DGV)CLEC11A [DGVbeta]
DECIPHER (Syndromes)19:51226605-51228981  ENSG00000105472
CONAN: Copy Number AnalysisCLEC11A 
Mutations
ICGC Data PortalCLEC11A 
TCGA Data PortalCLEC11A 
Broad Tumor PortalCLEC11A
OASIS PortalCLEC11A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC11A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC11A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC11A
DgiDB (Drug Gene Interaction Database)CLEC11A
DoCM (Curated mutations)CLEC11A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC11A (select a term)
intoGenCLEC11A
Cancer3DCLEC11A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604713   
Orphanet
MedgenCLEC11A
Genetic Testing Registry CLEC11A
NextProtQ9Y240 [Medical]
TSGene6320
GENETestsCLEC11A
Huge Navigator CLEC11A [HugePedia]
snp3D : Map Gene to Disease6320
BioCentury BCIQCLEC11A
ClinGenCLEC11A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6320
Chemical/Pharm GKB GenePA34996
Clinical trialCLEC11A
Miscellaneous
canSAR (ICR)CLEC11A (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC11A
EVEXCLEC11A
GoPubMedCLEC11A
iHOPCLEC11A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:00:46 CET 2017

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