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CLEC12B (C-type lectin domain family 12 member B)

Identity

Alias_namesC-type lectin domain family 12, member B
Other aliasUNQ5782
HGNC (Hugo) CLEC12B
LocusID (NCBI) 387837
Atlas_Id 61864
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 10010627 and ends at 10018800 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLEC12B (12p13.2) / ANKRD12 (18p11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC12B   31966
Cards
Entrez_Gene (NCBI)CLEC12B  387837  C-type lectin domain family 12 member B
AliasesUNQ5782
GeneCards (Weizmann)CLEC12B
Ensembl hg19 (Hinxton)ENSG00000256660 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256660 [Gene_View]  chr12:10010627-10018800 [Contig_View]  CLEC12B [Vega]
ICGC DataPortalENSG00000256660
TCGA cBioPortalCLEC12B
AceView (NCBI)CLEC12B
Genatlas (Paris)CLEC12B
WikiGenes387837
SOURCE (Princeton)CLEC12B
Genetics Home Reference (NIH)CLEC12B
Genomic and cartography
GoldenPath hg38 (UCSC)CLEC12B  -     chr12:10010627-10018800 +  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLEC12B  -     12p13.2   [Description]    (hg19-Feb_2009)
EnsemblCLEC12B - 12p13.2 [CytoView hg19]  CLEC12B - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBICLEC12B [Mapview hg19]  CLEC12B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI655492 AK128243 AK131027 AY358810 BC036036
RefSeq transcript (Entrez)NM_001129998 NM_001319241 NM_001319242 NM_205852
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLEC12B
Cluster EST : UnigeneHs.127937 [ NCBI ]
CGAP (NCI)Hs.127937
Alternative Splicing GalleryENSG00000256660
Gene ExpressionCLEC12B [ NCBI-GEO ]   CLEC12B [ EBI - ARRAY_EXPRESS ]   CLEC12B [ SEEK ]   CLEC12B [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC12B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387837
GTEX Portal (Tissue expression)CLEC12B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2HXU8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2HXU8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2HXU8
Splice isoforms : SwissVarQ2HXU8
PhosPhoSitePlusQ2HXU8
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    CTDL_fold    Ly49_N    NKR-like_CTLD   
Domain families : Pfam (Sanger)Lectin_C (PF00059)    Ly49 (PF08391)   
Domain families : Pfam (NCBI)pfam00059    pfam08391   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC12B
DMDM Disease mutations387837
Blocks (Seattle)CLEC12B
SuperfamilyQ2HXU8
Human Protein AtlasENSG00000256660
Peptide AtlasQ2HXU8
HPRD18266
IPIIPI00409688   IPI00873972   IPI01010044   
Protein Interaction databases
DIP (DOE-UCLA)Q2HXU8
IntAct (EBI)Q2HXU8
FunCoupENSG00000256660
BioGRIDCLEC12B
STRING (EMBL)CLEC12B
ZODIACCLEC12B
Ontologies - Pathways
QuickGOQ2HXU8
Ontology : AmiGOplasma membrane  integral component of membrane  carbohydrate binding  
Ontology : EGO-EBIplasma membrane  integral component of membrane  carbohydrate binding  
NDEx NetworkCLEC12B
Atlas of Cancer Signalling NetworkCLEC12B
Wikipedia pathwaysCLEC12B
Orthology - Evolution
OrthoDB387837
GeneTree (enSembl)ENSG00000256660
Phylogenetic Trees/Animal Genes : TreeFamCLEC12B
HOVERGENQ2HXU8
HOGENOMQ2HXU8
Homologs : HomoloGeneCLEC12B
Homology/Alignments : Family Browser (UCSC)CLEC12B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC12B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC12B
dbVarCLEC12B
ClinVarCLEC12B
1000_GenomesCLEC12B 
Exome Variant ServerCLEC12B
ExAC (Exome Aggregation Consortium)CLEC12B (select the gene name)
Genetic variants : HAPMAP387837
Genomic Variants (DGV)CLEC12B [DGVbeta]
DECIPHERCLEC12B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLEC12B 
Mutations
ICGC Data PortalCLEC12B 
TCGA Data PortalCLEC12B 
Broad Tumor PortalCLEC12B
OASIS PortalCLEC12B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC12B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC12B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC12B
DgiDB (Drug Gene Interaction Database)CLEC12B
DoCM (Curated mutations)CLEC12B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC12B (select a term)
intoGenCLEC12B
Cancer3DCLEC12B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLEC12B
Genetic Testing Registry CLEC12B
NextProtQ2HXU8 [Medical]
TSGene387837
GENETestsCLEC12B
Target ValidationCLEC12B
Huge Navigator CLEC12B [HugePedia]
snp3D : Map Gene to Disease387837
BioCentury BCIQCLEC12B
ClinGenCLEC12B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387837
Chemical/Pharm GKB GenePA162382325
Clinical trialCLEC12B
Miscellaneous
canSAR (ICR)CLEC12B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC12B
EVEXCLEC12B
GoPubMedCLEC12B
iHOPCLEC12B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:48 CEST 2017

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