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CLEC14A (C-type lectin domain containing 14A)

Identity

Alias_namesC14orf27
chromosome 14 open reading frame 27
C-type lectin domain family 14, member A
Other aliasCEG1
EGFR-5
HGNC (Hugo) CLEC14A
LocusID (NCBI) 161198
Atlas_Id 52670
Location 14q21.1  [Link to chromosome band 14q21]
Location_base_pair Starts at 38254000 and ends at 38256370 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CLEC14A (14q21.1) / FXYD6-FXYD2 (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC14A   19832
Cards
Entrez_Gene (NCBI)CLEC14A  161198  C-type lectin domain containing 14A
AliasesC14orf27; CEG1; EGFR-5
GeneCards (Weizmann)CLEC14A
Ensembl hg19 (Hinxton)ENSG00000176435 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176435 [Gene_View]  chr14:38254000-38256370 [Contig_View]  CLEC14A [Vega]
ICGC DataPortalENSG00000176435
TCGA cBioPortalCLEC14A
AceView (NCBI)CLEC14A
Genatlas (Paris)CLEC14A
WikiGenes161198
SOURCE (Princeton)CLEC14A
Genetics Home Reference (NIH)CLEC14A
Genomic and cartography
GoldenPath hg38 (UCSC)CLEC14A  -     chr14:38254000-38256370 -  14q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLEC14A  -     14q21.1   [Description]    (hg19-Feb_2009)
EnsemblCLEC14A - 14q21.1 [CytoView hg19]  CLEC14A - 14q21.1 [CytoView hg38]
Mapping of homologs : NCBICLEC14A [Mapview hg19]  CLEC14A [Mapview hg38]
OMIM616845   
Gene and transcription
Genbank (Entrez)AF161403 AY358395 AY573061 AY606132 BC031567
RefSeq transcript (Entrez)NM_175060
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLEC14A
Cluster EST : UnigeneHs.525307 [ NCBI ]
CGAP (NCI)Hs.525307
Alternative Splicing GalleryENSG00000176435
Gene ExpressionCLEC14A [ NCBI-GEO ]   CLEC14A [ EBI - ARRAY_EXPRESS ]   CLEC14A [ SEEK ]   CLEC14A [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC14A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161198
GTEX Portal (Tissue expression)CLEC14A
Human Protein AtlasENSG00000176435-CLEC14A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86T13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86T13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86T13
Splice isoforms : SwissVarQ86T13
PhosPhoSitePlusQ86T13
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    C_TYPE_LECTIN_2 (PS50041)    EGF_2 (PS01186)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    CTDL_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC14A
DMDM Disease mutations161198
Blocks (Seattle)CLEC14A
SuperfamilyQ86T13
Human Protein Atlas [tissue]ENSG00000176435-CLEC14A [tissue]
Peptide AtlasQ86T13
HPRD10711
IPIIPI00240345   IPI00383187   IPI01018088   
Protein Interaction databases
DIP (DOE-UCLA)Q86T13
IntAct (EBI)Q86T13
FunCoupENSG00000176435
BioGRIDCLEC14A
STRING (EMBL)CLEC14A
ZODIACCLEC14A
Ontologies - Pathways
QuickGOQ86T13
Ontology : AmiGOexternal side of plasma membrane  integral component of membrane  carbohydrate binding  extracellular matrix  extracellular exosome  extracellular matrix protein binding  
Ontology : EGO-EBIexternal side of plasma membrane  integral component of membrane  carbohydrate binding  extracellular matrix  extracellular exosome  extracellular matrix protein binding  
NDEx NetworkCLEC14A
Atlas of Cancer Signalling NetworkCLEC14A
Wikipedia pathwaysCLEC14A
Orthology - Evolution
OrthoDB161198
GeneTree (enSembl)ENSG00000176435
Phylogenetic Trees/Animal Genes : TreeFamCLEC14A
HOVERGENQ86T13
HOGENOMQ86T13
Homologs : HomoloGeneCLEC14A
Homology/Alignments : Family Browser (UCSC)CLEC14A
Gene fusions - Rearrangements
Tumor Fusion PortalCLEC14A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC14A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC14A
dbVarCLEC14A
ClinVarCLEC14A
1000_GenomesCLEC14A 
Exome Variant ServerCLEC14A
ExAC (Exome Aggregation Consortium)ENSG00000176435
GNOMAD BrowserENSG00000176435
Genetic variants : HAPMAP161198
Genomic Variants (DGV)CLEC14A [DGVbeta]
DECIPHERCLEC14A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLEC14A 
Mutations
ICGC Data PortalCLEC14A 
TCGA Data PortalCLEC14A 
Broad Tumor PortalCLEC14A
OASIS PortalCLEC14A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC14A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC14A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC14A
DgiDB (Drug Gene Interaction Database)CLEC14A
DoCM (Curated mutations)CLEC14A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC14A (select a term)
intoGenCLEC14A
Cancer3DCLEC14A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616845   
Orphanet
DisGeNETCLEC14A
MedgenCLEC14A
Genetic Testing Registry CLEC14A
NextProtQ86T13 [Medical]
TSGene161198
GENETestsCLEC14A
Target ValidationCLEC14A
Huge Navigator CLEC14A [HugePedia]
snp3D : Map Gene to Disease161198
BioCentury BCIQCLEC14A
ClinGenCLEC14A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD161198
Chemical/Pharm GKB GenePA134890576
Clinical trialCLEC14A
Miscellaneous
canSAR (ICR)CLEC14A (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC14A
EVEXCLEC14A
GoPubMedCLEC14A
iHOPCLEC14A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:08:03 CET 2017

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