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CLEC16A (C-type lectin domain containing 16A)

Identity

Alias_namesKIAA0350
KIAA0350
C-type lectin domain family 16, member A
Alias_symbol (synonym)Gop-1
Other alias
HGNC (Hugo) CLEC16A
LocusID (NCBI) 23274
Atlas_Id 61865
Location 16p13.13  [Link to chromosome band 16p13]
Location_base_pair Starts at 10944488 and ends at 11126344 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLEC16A (16p13.13) / LITAF (16p13.13)CLEC16A (16p13.13) / MFSD2A (1p34.2)CLEC16A (16p13.13) / NBAS (2p24.3)
CLEC16A (16p13.13) / OTUB2 (14q32.12)CLEC16A (16p13.13) / TM7SF3 (12p11.23)CLEC16A (16p13.13) / TXNDC11 (16p13.13)
CORO7 (16p13.3) / CLEC16A (16p13.13)ENTPD2 (9q34.3) / CLEC16A (16p13.13)SNX29 (16p13.13) / CLEC16A (16p13.13)
SNX29 CLEC16ACORO7 CLEC16A

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC16A   29013
Cards
Entrez_Gene (NCBI)CLEC16A  23274  C-type lectin domain containing 16A
AliasesGop-1; KIAA0350
GeneCards (Weizmann)CLEC16A
Ensembl hg19 (Hinxton)ENSG00000038532 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000038532 [Gene_View]  chr16:10944488-11126344 [Contig_View]  CLEC16A [Vega]
ICGC DataPortalENSG00000038532
TCGA cBioPortalCLEC16A
AceView (NCBI)CLEC16A
Genatlas (Paris)CLEC16A
WikiGenes23274
SOURCE (Princeton)CLEC16A
Genetics Home Reference (NIH)CLEC16A
Genomic and cartography
GoldenPath hg38 (UCSC)CLEC16A  -     chr16:10944488-11126344 +  16p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLEC16A  -     16p13.13   [Description]    (hg19-Feb_2009)
EnsemblCLEC16A - 16p13.13 [CytoView hg19]  CLEC16A - 16p13.13 [CytoView hg38]
Mapping of homologs : NCBICLEC16A [Mapview hg19]  CLEC16A [Mapview hg38]
OMIM611303   
Gene and transcription
Genbank (Entrez)AB002348 AK125825 AK126771 AW072095 BC009721
RefSeq transcript (Entrez)NM_001243403 NM_015226
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLEC16A
Cluster EST : UnigeneHs.35490 [ NCBI ]
CGAP (NCI)Hs.35490
Alternative Splicing GalleryENSG00000038532
Gene ExpressionCLEC16A [ NCBI-GEO ]   CLEC16A [ EBI - ARRAY_EXPRESS ]   CLEC16A [ SEEK ]   CLEC16A [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC16A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23274
GTEX Portal (Tissue expression)CLEC16A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2KHT3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2KHT3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2KHT3
Splice isoforms : SwissVarQ2KHT3
PhosPhoSitePlusQ2KHT3
Domains : Interpro (EBI)Uncharacterised_FPL   
Domain families : Pfam (Sanger)FPL (PF09758)   
Domain families : Pfam (NCBI)pfam09758   
Conserved Domain (NCBI)CLEC16A
DMDM Disease mutations23274
Blocks (Seattle)CLEC16A
SuperfamilyQ2KHT3
Human Protein AtlasENSG00000038532
Peptide AtlasQ2KHT3
HPRD17185
IPIIPI00169441   IPI00917061   IPI00479880   IPI00916269   IPI00916890   IPI00916141   
Protein Interaction databases
DIP (DOE-UCLA)Q2KHT3
IntAct (EBI)Q2KHT3
FunCoupENSG00000038532
BioGRIDCLEC16A
STRING (EMBL)CLEC16A
ZODIACCLEC16A
Ontologies - Pathways
QuickGOQ2KHT3
Ontology : AmiGOlysosome  autophagy  negative regulation of proteasomal ubiquitin-dependent protein catabolic process  endolysosome membrane  positive regulation of autophagosome maturation  negative regulation of macromitophagy  
Ontology : EGO-EBIlysosome  autophagy  negative regulation of proteasomal ubiquitin-dependent protein catabolic process  endolysosome membrane  positive regulation of autophagosome maturation  negative regulation of macromitophagy  
NDEx NetworkCLEC16A
Atlas of Cancer Signalling NetworkCLEC16A
Wikipedia pathwaysCLEC16A
Orthology - Evolution
OrthoDB23274
GeneTree (enSembl)ENSG00000038532
Phylogenetic Trees/Animal Genes : TreeFamCLEC16A
HOVERGENQ2KHT3
HOGENOMQ2KHT3
Homologs : HomoloGeneCLEC16A
Homology/Alignments : Family Browser (UCSC)CLEC16A
Gene fusions - Rearrangements
Fusion: TCGASNX29 CLEC16A
Fusion: TCGACORO7 CLEC16A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC16A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC16A
dbVarCLEC16A
ClinVarCLEC16A
1000_GenomesCLEC16A 
Exome Variant ServerCLEC16A
ExAC (Exome Aggregation Consortium)CLEC16A (select the gene name)
Genetic variants : HAPMAP23274
Genomic Variants (DGV)CLEC16A [DGVbeta]
DECIPHERCLEC16A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLEC16A 
Mutations
ICGC Data PortalCLEC16A 
TCGA Data PortalCLEC16A 
Broad Tumor PortalCLEC16A
OASIS PortalCLEC16A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC16A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC16A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC16A
DgiDB (Drug Gene Interaction Database)CLEC16A
DoCM (Curated mutations)CLEC16A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC16A (select a term)
intoGenCLEC16A
Cancer3DCLEC16A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611303   
Orphanet
MedgenCLEC16A
Genetic Testing Registry CLEC16A
NextProtQ2KHT3 [Medical]
TSGene23274
GENETestsCLEC16A
Target ValidationCLEC16A
Huge Navigator CLEC16A [HugePedia]
snp3D : Map Gene to Disease23274
BioCentury BCIQCLEC16A
ClinGenCLEC16A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23274
Chemical/Pharm GKB GenePA162382340
Clinical trialCLEC16A
Miscellaneous
canSAR (ICR)CLEC16A (select the gene name)
Probes
Litterature
PubMed80 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC16A
EVEXCLEC16A
GoPubMedCLEC16A
iHOPCLEC16A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:48 CEST 2017

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