Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CLEC17A (C-type lectin domain containing 17A)

Identity

Alias (NCBI)-
HGNC (Hugo) CLEC17A
HGNC Alias symbFLJ45910
HGNC Alias nameprolectin
HGNC Previous nameC-type lectin domain family 17, member A
 C-type lectin domain family 17 member A
LocusID (NCBI) 388512
Atlas_Id 57302
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 14583084 and ends at 14611144 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DOK5 (20q13.2) / CLEC17A (19p13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CLEC17A   34520
Cards
Entrez_Gene (NCBI)CLEC17A    C-type lectin domain containing 17A
Aliases
GeneCards (Weizmann)CLEC17A
Ensembl hg19 (Hinxton)ENSG00000187912 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187912 [Gene_View]  ENSG00000187912 [Sequence]  chr19:14583084-14611144 [Contig_View]  CLEC17A [Vega]
ICGC DataPortalENSG00000187912
TCGA cBioPortalCLEC17A
AceView (NCBI)CLEC17A
Genatlas (Paris)CLEC17A
SOURCE (Princeton)CLEC17A
Genetics Home Reference (NIH)CLEC17A
Genomic and cartography
GoldenPath hg38 (UCSC)CLEC17A  -     chr19:14583084-14611144 +  19p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLEC17A  -     19p13.12   [Description]    (hg19-Feb_2009)
GoldenPathCLEC17A - 19p13.12 [CytoView hg19]  CLEC17A - 19p13.12 [CytoView hg38]
ImmunoBaseENSG00000187912
Genome Data Viewer NCBICLEC17A [Mapview hg19]  
OMIM616838   
Gene and transcription
Genbank (Entrez)BC140848 BC144664 BC144665
RefSeq transcript (Entrez)NM_001204118 NM_207390
Consensus coding sequences : CCDS (NCBI)CLEC17A
Gene ExpressionCLEC17A [ NCBI-GEO ]   CLEC17A [ EBI - ARRAY_EXPRESS ]   CLEC17A [ SEEK ]   CLEC17A [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC17A [ Firebrowse - Broad ]
GenevisibleExpression of CLEC17A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388512
GTEX Portal (Tissue expression)CLEC17A
Human Protein AtlasENSG00000187912-CLEC17A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZS10   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZS10  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZS10
PhosPhoSitePlusQ6ZS10
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link_sf    C-type_lectin_CS    CD209-like_CTLD    CTDL_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC17A
SuperfamilyQ6ZS10
AlphaFold pdb e-kbQ6ZS10   
Human Protein Atlas [tissue]ENSG00000187912-CLEC17A [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q6ZS10
IntAct (EBI)Q6ZS10
BioGRIDCLEC17A
STRING (EMBL)CLEC17A
ZODIACCLEC17A
Ontologies - Pathways
QuickGOQ6ZS10
Ontology : AmiGOprotein binding  mannose binding  cell surface  integral component of membrane  identical protein binding  fucose binding  metal ion binding  
Ontology : EGO-EBIprotein binding  mannose binding  cell surface  integral component of membrane  identical protein binding  fucose binding  metal ion binding  
NDEx NetworkCLEC17A
Atlas of Cancer Signalling NetworkCLEC17A
Wikipedia pathwaysCLEC17A
Orthology - Evolution
OrthoDB388512
GeneTree (enSembl)ENSG00000187912
Phylogenetic Trees/Animal Genes : TreeFamCLEC17A
Homologs : HomoloGeneCLEC17A
Homology/Alignments : Family Browser (UCSC)CLEC17A
Gene fusions - Rearrangements
Fusion : QuiverCLEC17A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC17A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC17A
dbVarCLEC17A
ClinVarCLEC17A
MonarchCLEC17A
1000_GenomesCLEC17A 
Exome Variant ServerCLEC17A
GNOMAD BrowserENSG00000187912
Varsome BrowserCLEC17A
ACMGCLEC17A variants
VarityQ6ZS10
Genomic Variants (DGV)CLEC17A [DGVbeta]
DECIPHERCLEC17A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLEC17A 
Mutations
ICGC Data PortalCLEC17A 
TCGA Data PortalCLEC17A 
Broad Tumor PortalCLEC17A
OASIS PortalCLEC17A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC17A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCLEC17A
Mutations and Diseases : HGMDCLEC17A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCLEC17A
DgiDB (Drug Gene Interaction Database)CLEC17A
DoCM (Curated mutations)CLEC17A
CIViC (Clinical Interpretations of Variants in Cancer)CLEC17A
Cancer3DCLEC17A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616838   
Orphanet
DisGeNETCLEC17A
MedgenCLEC17A
Genetic Testing Registry CLEC17A
NextProtQ6ZS10 [Medical]
GENETestsCLEC17A
Target ValidationCLEC17A
Huge Navigator CLEC17A [HugePedia]
ClinGenCLEC17A
Clinical trials, drugs, therapy
MyCancerGenomeCLEC17A
Protein Interactions : CTDCLEC17A
Pharm GKB GenePA164717947
PharosQ6ZS10
Clinical trialCLEC17A
Miscellaneous
canSAR (ICR)CLEC17A
HarmonizomeCLEC17A
DataMed IndexCLEC17A
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCLEC17A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:04:16 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.