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CLEC17A (C-type lectin domain containing 17A)

Identity

Alias_namesC-type lectin domain family 17, member A
Alias_symbol (synonym)FLJ45910
Other alias-
HGNC (Hugo) CLEC17A
LocusID (NCBI) 388512
Atlas_Id 61866
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 14583084 and ends at 14611144 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DOK5 (20q13.2) / CLEC17A (19p13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC17A   34520
Cards
Entrez_Gene (NCBI)CLEC17A  388512  C-type lectin domain containing 17A
Aliases
GeneCards (Weizmann)CLEC17A
Ensembl hg19 (Hinxton)ENSG00000187912 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187912 [Gene_View]  chr19:14583084-14611144 [Contig_View]  CLEC17A [Vega]
ICGC DataPortalENSG00000187912
TCGA cBioPortalCLEC17A
AceView (NCBI)CLEC17A
Genatlas (Paris)CLEC17A
WikiGenes388512
SOURCE (Princeton)CLEC17A
Genetics Home Reference (NIH)CLEC17A
Genomic and cartography
GoldenPath hg38 (UCSC)CLEC17A  -     chr19:14583084-14611144 +  19p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLEC17A  -     19p13.12   [Description]    (hg19-Feb_2009)
EnsemblCLEC17A - 19p13.12 [CytoView hg19]  CLEC17A - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBICLEC17A [Mapview hg19]  CLEC17A [Mapview hg38]
OMIM616838   
Gene and transcription
Genbank (Entrez)BC140848 BC144664 BC144665
RefSeq transcript (Entrez)NM_001204118 NM_207390
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLEC17A
Cluster EST : UnigeneHs.567933 [ NCBI ]
CGAP (NCI)Hs.567933
Alternative Splicing GalleryENSG00000187912
Gene ExpressionCLEC17A [ NCBI-GEO ]   CLEC17A [ EBI - ARRAY_EXPRESS ]   CLEC17A [ SEEK ]   CLEC17A [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC17A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388512
GTEX Portal (Tissue expression)CLEC17A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZS10   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZS10  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZS10
Splice isoforms : SwissVarQ6ZS10
PhosPhoSitePlusQ6ZS10
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    C-type_lectin_CS    CD209-like_CTLD    CTDL_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC17A
DMDM Disease mutations388512
Blocks (Seattle)CLEC17A
SuperfamilyQ6ZS10
Human Protein AtlasENSG00000187912
Peptide AtlasQ6ZS10
HPRD16993
IPIIPI00867645   IPI00969059   IPI00411721   IPI01022971   IPI00981713   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZS10
IntAct (EBI)Q6ZS10
FunCoupENSG00000187912
BioGRIDCLEC17A
STRING (EMBL)CLEC17A
ZODIACCLEC17A
Ontologies - Pathways
QuickGOQ6ZS10
Ontology : AmiGOmannose binding  cell surface  integral component of membrane  fucose binding  metal ion binding  
Ontology : EGO-EBImannose binding  cell surface  integral component of membrane  fucose binding  metal ion binding  
NDEx NetworkCLEC17A
Atlas of Cancer Signalling NetworkCLEC17A
Wikipedia pathwaysCLEC17A
Orthology - Evolution
OrthoDB388512
GeneTree (enSembl)ENSG00000187912
Phylogenetic Trees/Animal Genes : TreeFamCLEC17A
HOVERGENQ6ZS10
HOGENOMQ6ZS10
Homologs : HomoloGeneCLEC17A
Homology/Alignments : Family Browser (UCSC)CLEC17A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC17A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC17A
dbVarCLEC17A
ClinVarCLEC17A
1000_GenomesCLEC17A 
Exome Variant ServerCLEC17A
ExAC (Exome Aggregation Consortium)CLEC17A (select the gene name)
Genetic variants : HAPMAP388512
Genomic Variants (DGV)CLEC17A [DGVbeta]
DECIPHERCLEC17A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLEC17A 
Mutations
ICGC Data PortalCLEC17A 
TCGA Data PortalCLEC17A 
Broad Tumor PortalCLEC17A
OASIS PortalCLEC17A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC17A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC17A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC17A
DgiDB (Drug Gene Interaction Database)CLEC17A
DoCM (Curated mutations)CLEC17A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC17A (select a term)
intoGenCLEC17A
Cancer3DCLEC17A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616838   
Orphanet
MedgenCLEC17A
Genetic Testing Registry CLEC17A
NextProtQ6ZS10 [Medical]
TSGene388512
GENETestsCLEC17A
Target ValidationCLEC17A
Huge Navigator CLEC17A [HugePedia]
snp3D : Map Gene to Disease388512
BioCentury BCIQCLEC17A
ClinGenCLEC17A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388512
Chemical/Pharm GKB GenePA164717947
Clinical trialCLEC17A
Miscellaneous
canSAR (ICR)CLEC17A (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC17A
EVEXCLEC17A
GoPubMedCLEC17A
iHOPCLEC17A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:49 CEST 2017

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