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CLEC18B (C-type lectin domain family 18, member B)

Identity

Alias_namesC-type lectin domain family 18, member B
Other aliasMRCL2
HGNC (Hugo) CLEC18B
LocusID (NCBI) 497190
Atlas_Id 61868
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 74442529 and ends at 74455368 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC18B   33849
Cards
Entrez_Gene (NCBI)CLEC18B  497190  C-type lectin domain family 18, member B
AliasesMRCL2
GeneCards (Weizmann)CLEC18B
Ensembl hg19 (Hinxton)ENSG00000140839 [Gene_View]  chr16:74442529-74455368 [Contig_View]  CLEC18B [Vega]
Ensembl hg38 (Hinxton)ENSG00000140839 [Gene_View]  chr16:74442529-74455368 [Contig_View]  CLEC18B [Vega]
ICGC DataPortalENSG00000140839
TCGA cBioPortalCLEC18B
AceView (NCBI)CLEC18B
Genatlas (Paris)CLEC18B
WikiGenes497190
SOURCE (Princeton)CLEC18B
Genetics Home Reference (NIH)CLEC18B
Genomic and cartography
GoldenPath hg19 (UCSC)CLEC18B  -     chr16:74442529-74455368 -  16q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLEC18B  -     16q23.1   [Description]    (hg38-Dec_2013)
EnsemblCLEC18B - 16q23.1 [CytoView hg19]  CLEC18B - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBICLEC18B [Mapview hg19]  CLEC18B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK293982 AY358373 BM695392 DA375446 DC309733
RefSeq transcript (Entrez)NM_001011880
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)CLEC18B
Cluster EST : UnigeneHs.592064 [ NCBI ]
CGAP (NCI)Hs.592064
Alternative Splicing GalleryENSG00000140839
Gene ExpressionCLEC18B [ NCBI-GEO ]   CLEC18B [ EBI - ARRAY_EXPRESS ]   CLEC18B [ SEEK ]   CLEC18B [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC18B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)497190
GTEX Portal (Tissue expression)CLEC18B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXF7
Splice isoforms : SwissVarQ6UXF7
PhosPhoSitePlusQ6UXF7
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)   
Domains : Interpro (EBI)Allrgn_V5/Tpx1    C-type_lectin    C-type_lectin-like    C-type_lectin_CS    C-type_lectin_fold    CAP_domain    EG-like_dom    EGF-like_CS   
Domain families : Pfam (Sanger)CAP (PF00188)    hEGF (PF12661)    Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00188    pfam12661    pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  EGF (SM00181)  SCP (SM00198)  
Conserved Domain (NCBI)CLEC18B
DMDM Disease mutations497190
Blocks (Seattle)CLEC18B
SuperfamilyQ6UXF7
Human Protein AtlasENSG00000140839
Peptide AtlasQ6UXF7
HPRD17419
IPIIPI00456692   IPI00910867   IPI00939749   IPI01013512   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXF7
IntAct (EBI)Q6UXF7
FunCoupENSG00000140839
BioGRIDCLEC18B
STRING (EMBL)CLEC18B
ZODIACCLEC18B
Ontologies - Pathways
QuickGOQ6UXF7
Ontology : AmiGOextracellular region  carbohydrate binding  
Ontology : EGO-EBIextracellular region  carbohydrate binding  
NDEx NetworkCLEC18B
Atlas of Cancer Signalling NetworkCLEC18B
Wikipedia pathwaysCLEC18B
Orthology - Evolution
OrthoDB497190
GeneTree (enSembl)ENSG00000140839
Phylogenetic Trees/Animal Genes : TreeFamCLEC18B
HOVERGENQ6UXF7
HOGENOMQ6UXF7
Homologs : HomoloGeneCLEC18B
Homology/Alignments : Family Browser (UCSC)CLEC18B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC18B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC18B
dbVarCLEC18B
ClinVarCLEC18B
1000_GenomesCLEC18B 
Exome Variant ServerCLEC18B
ExAC (Exome Aggregation Consortium)CLEC18B (select the gene name)
Genetic variants : HAPMAP497190
Genomic Variants (DGV)CLEC18B [DGVbeta]
DECIPHER (Syndromes)16:74442529-74455368  ENSG00000140839
CONAN: Copy Number AnalysisCLEC18B 
Mutations
ICGC Data PortalCLEC18B 
TCGA Data PortalCLEC18B 
Broad Tumor PortalCLEC18B
OASIS PortalCLEC18B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC18B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC18B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC18B
DgiDB (Drug Gene Interaction Database)CLEC18B
DoCM (Curated mutations)CLEC18B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC18B (select a term)
intoGenCLEC18B
Cancer3DCLEC18B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLEC18B
Genetic Testing Registry CLEC18B
NextProtQ6UXF7 [Medical]
TSGene497190
GENETestsCLEC18B
Huge Navigator CLEC18B [HugePedia]
snp3D : Map Gene to Disease497190
BioCentury BCIQCLEC18B
ClinGenCLEC18B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD497190
Chemical/Pharm GKB GenePA164718007
Clinical trialCLEC18B
Miscellaneous
canSAR (ICR)CLEC18B (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC18B
EVEXCLEC18B
GoPubMedCLEC18B
iHOPCLEC18B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:37 CET 2017

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