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CLEC18C (C-type lectin domain family 18, member C)

Identity

Alias_namesC-type lectin domain family 18, member C
Alias_symbol (synonym)MGC34761
Other aliasMRCL
MRCL3
HGNC (Hugo) CLEC18C
LocusID (NCBI) 283971
Atlas_Id 61869
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 70208076 and ends at 70220798 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC18C   28538
Cards
Entrez_Gene (NCBI)CLEC18C  283971  C-type lectin domain family 18, member C
AliasesMRCL; MRCL3
GeneCards (Weizmann)CLEC18C
Ensembl hg19 (Hinxton)ENSG00000157335 [Gene_View]  chr16:70208076-70220798 [Contig_View]  CLEC18C [Vega]
Ensembl hg38 (Hinxton)ENSG00000157335 [Gene_View]  chr16:70208076-70220798 [Contig_View]  CLEC18C [Vega]
ICGC DataPortalENSG00000157335
TCGA cBioPortalCLEC18C
AceView (NCBI)CLEC18C
Genatlas (Paris)CLEC18C
WikiGenes283971
SOURCE (Princeton)CLEC18C
Genetics Home Reference (NIH)CLEC18C
Genomic and cartography
GoldenPath hg19 (UCSC)CLEC18C  -     chr16:70208076-70220798 +  16q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLEC18C  -     16q22.1   [Description]    (hg38-Dec_2013)
EnsemblCLEC18C - 16q22.1 [CytoView hg19]  CLEC18C - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBICLEC18C [Mapview hg19]  CLEC18C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF448856 AL833339 BC039068 BC062573
RefSeq transcript (Entrez)NM_173619
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)CLEC18C
Cluster EST : UnigeneHs.556045 [ NCBI ]
CGAP (NCI)Hs.556045
Alternative Splicing GalleryENSG00000157335
Gene ExpressionCLEC18C [ NCBI-GEO ]   CLEC18C [ EBI - ARRAY_EXPRESS ]   CLEC18C [ SEEK ]   CLEC18C [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC18C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283971
GTEX Portal (Tissue expression)CLEC18C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCF0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCF0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCF0
Splice isoforms : SwissVarQ8NCF0
PhosPhoSitePlusQ8NCF0
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)   
Domains : Interpro (EBI)Allrgn_V5/Tpx1    C-type_lectin    C-type_lectin-like    C-type_lectin_CS    C-type_lectin_fold    CAP_domain    EG-like_dom    EGF-like_CS   
Domain families : Pfam (Sanger)CAP (PF00188)    hEGF (PF12661)    Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00188    pfam12661    pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  EGF (SM00181)  SCP (SM00198)  
Conserved Domain (NCBI)CLEC18C
DMDM Disease mutations283971
Blocks (Seattle)CLEC18C
SuperfamilyQ8NCF0
Human Protein AtlasENSG00000157335
Peptide AtlasQ8NCF0
HPRD14587
IPIIPI00396078   IPI00887489   IPI01010573   IPI01011289   IPI01014306   IPI00848097   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCF0
IntAct (EBI)Q8NCF0
FunCoupENSG00000157335
BioGRIDCLEC18C
STRING (EMBL)CLEC18C
ZODIACCLEC18C
Ontologies - Pathways
QuickGOQ8NCF0
Ontology : AmiGOextracellular region  carbohydrate binding  
Ontology : EGO-EBIextracellular region  carbohydrate binding  
NDEx NetworkCLEC18C
Atlas of Cancer Signalling NetworkCLEC18C
Wikipedia pathwaysCLEC18C
Orthology - Evolution
OrthoDB283971
GeneTree (enSembl)ENSG00000157335
Phylogenetic Trees/Animal Genes : TreeFamCLEC18C
HOVERGENQ8NCF0
HOGENOMQ8NCF0
Homologs : HomoloGeneCLEC18C
Homology/Alignments : Family Browser (UCSC)CLEC18C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC18C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC18C
dbVarCLEC18C
ClinVarCLEC18C
1000_GenomesCLEC18C 
Exome Variant ServerCLEC18C
ExAC (Exome Aggregation Consortium)CLEC18C (select the gene name)
Genetic variants : HAPMAP283971
Genomic Variants (DGV)CLEC18C [DGVbeta]
DECIPHER (Syndromes)16:70208076-70220798  ENSG00000157335
CONAN: Copy Number AnalysisCLEC18C 
Mutations
ICGC Data PortalCLEC18C 
TCGA Data PortalCLEC18C 
Broad Tumor PortalCLEC18C
OASIS PortalCLEC18C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC18C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC18C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC18C
DgiDB (Drug Gene Interaction Database)CLEC18C
DoCM (Curated mutations)CLEC18C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC18C (select a term)
intoGenCLEC18C
Cancer3DCLEC18C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLEC18C
Genetic Testing Registry CLEC18C
NextProtQ8NCF0 [Medical]
TSGene283971
GENETestsCLEC18C
Huge Navigator CLEC18C [HugePedia]
snp3D : Map Gene to Disease283971
BioCentury BCIQCLEC18C
ClinGenCLEC18C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283971
Chemical/Pharm GKB GenePA164718038
Clinical trialCLEC18C
Miscellaneous
canSAR (ICR)CLEC18C (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC18C
EVEXCLEC18C
GoPubMedCLEC18C
iHOPCLEC18C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:37 CET 2017

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