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CLEC19A (C-type lectin domain containing 19A)

Identity

Alias_namesC-type lectin domain family 19, member A
Other alias-
HGNC (Hugo) CLEC19A
LocusID (NCBI) 728276
Atlas_Id 61870
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 19285783 and ends at 19310947 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC19A   34522
Cards
Entrez_Gene (NCBI)CLEC19A  728276  C-type lectin domain containing 19A
Aliases
GeneCards (Weizmann)CLEC19A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:19285783-19310947 [Contig_View]  CLEC19A [Vega]
TCGA cBioPortalCLEC19A
AceView (NCBI)CLEC19A
Genatlas (Paris)CLEC19A
WikiGenes728276
SOURCE (Princeton)CLEC19A
Genetics Home Reference (NIH)CLEC19A
Genomic and cartography
GoldenPath hg38 (UCSC)CLEC19A  -     chr16:19285783-19310947 +  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLEC19A  -     16p12.3   [Description]    (hg19-Feb_2009)
EnsemblCLEC19A - 16p12.3 [CytoView hg19]  CLEC19A - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBICLEC19A [Mapview hg19]  CLEC19A [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC118600 BC119018 BX640722
RefSeq transcript (Entrez)NM_001256720
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLEC19A
Cluster EST : UnigeneHs.632180 [ NCBI ]
CGAP (NCI)Hs.632180
Gene ExpressionCLEC19A [ NCBI-GEO ]   CLEC19A [ EBI - ARRAY_EXPRESS ]   CLEC19A [ SEEK ]   CLEC19A [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC19A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728276
GTEX Portal (Tissue expression)CLEC19A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXS0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXS0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXS0
Splice isoforms : SwissVarQ6UXS0
PhosPhoSitePlusQ6UXS0
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    CTDL_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Conserved Domain (NCBI)CLEC19A
DMDM Disease mutations728276
Blocks (Seattle)CLEC19A
SuperfamilyQ6UXS0
Peptide AtlasQ6UXS0
IPIIPI00399172   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXS0
IntAct (EBI)Q6UXS0
BioGRIDCLEC19A
STRING (EMBL)CLEC19A
ZODIACCLEC19A
Ontologies - Pathways
QuickGOQ6UXS0
Ontology : AmiGOextracellular region  carbohydrate binding  
Ontology : EGO-EBIextracellular region  carbohydrate binding  
NDEx NetworkCLEC19A
Atlas of Cancer Signalling NetworkCLEC19A
Wikipedia pathwaysCLEC19A
Orthology - Evolution
OrthoDB728276
Phylogenetic Trees/Animal Genes : TreeFamCLEC19A
HOVERGENQ6UXS0
HOGENOMQ6UXS0
Homologs : HomoloGeneCLEC19A
Homology/Alignments : Family Browser (UCSC)CLEC19A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC19A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC19A
dbVarCLEC19A
ClinVarCLEC19A
1000_GenomesCLEC19A 
Exome Variant ServerCLEC19A
ExAC (Exome Aggregation Consortium)CLEC19A (select the gene name)
Genetic variants : HAPMAP728276
Genomic Variants (DGV)CLEC19A [DGVbeta]
DECIPHERCLEC19A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLEC19A 
Mutations
ICGC Data PortalCLEC19A 
TCGA Data PortalCLEC19A 
Broad Tumor PortalCLEC19A
OASIS PortalCLEC19A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC19A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC19A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC19A
DgiDB (Drug Gene Interaction Database)CLEC19A
DoCM (Curated mutations)CLEC19A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC19A (select a term)
intoGenCLEC19A
Cancer3DCLEC19A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLEC19A
Genetic Testing Registry CLEC19A
NextProtQ6UXS0 [Medical]
TSGene728276
GENETestsCLEC19A
Target ValidationCLEC19A
Huge Navigator CLEC19A [HugePedia]
snp3D : Map Gene to Disease728276
BioCentury BCIQCLEC19A
ClinGenCLEC19A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728276
Chemical/Pharm GKB GenePA165449848
Clinical trialCLEC19A
Miscellaneous
canSAR (ICR)CLEC19A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC19A
EVEXCLEC19A
GoPubMedCLEC19A
iHOPCLEC19A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:55 CEST 2017

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