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CLEC1A (C-type lectin domain family 1 member A)

Identity

Alias_namesC-type lectin domain family 1, member A
Alias_symbol (synonym)CLEC1
MGC34328
Other aliasCLEC-1
HGNC (Hugo) CLEC1A
LocusID (NCBI) 51267
Atlas_Id 61871
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 10069554 and ends at 10099065 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BCYRN1 (Xq13.1) / CLEC1A (12p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC1A   24355
Cards
Entrez_Gene (NCBI)CLEC1A  51267  C-type lectin domain family 1 member A
AliasesCLEC-1; CLEC1
GeneCards (Weizmann)CLEC1A
Ensembl hg19 (Hinxton)ENSG00000150048 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150048 [Gene_View]  chr12:10069554-10099065 [Contig_View]  CLEC1A [Vega]
ICGC DataPortalENSG00000150048
TCGA cBioPortalCLEC1A
AceView (NCBI)CLEC1A
Genatlas (Paris)CLEC1A
WikiGenes51267
SOURCE (Princeton)CLEC1A
Genetics Home Reference (NIH)CLEC1A
Genomic and cartography
GoldenPath hg38 (UCSC)CLEC1A  -     chr12:10069554-10099065 -  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLEC1A  -     12p13.2   [Description]    (hg19-Feb_2009)
EnsemblCLEC1A - 12p13.2 [CytoView hg19]  CLEC1A - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBICLEC1A [Mapview hg19]  CLEC1A [Mapview hg38]
OMIM606782   
Gene and transcription
Genbank (Entrez)AF200949 AK075114 AK091989 AK291584 AK300979
RefSeq transcript (Entrez)NM_001297748 NM_001297749 NM_001297750 NM_001297751 NM_016511
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLEC1A
Cluster EST : UnigeneHs.29549 [ NCBI ]
CGAP (NCI)Hs.29549
Alternative Splicing GalleryENSG00000150048
Gene ExpressionCLEC1A [ NCBI-GEO ]   CLEC1A [ EBI - ARRAY_EXPRESS ]   CLEC1A [ SEEK ]   CLEC1A [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51267
GTEX Portal (Tissue expression)CLEC1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NC01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NC01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NC01
Splice isoforms : SwissVarQ8NC01
PhosPhoSitePlusQ8NC01
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    CTDL_fold    NKR-like_CTLD   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC1A
DMDM Disease mutations51267
Blocks (Seattle)CLEC1A
SuperfamilyQ8NC01
Human Protein AtlasENSG00000150048
Peptide AtlasQ8NC01
HPRD09489
IPIIPI00328246   IPI00789445   IPI00909129   IPI01014116   IPI00942183   
Protein Interaction databases
DIP (DOE-UCLA)Q8NC01
IntAct (EBI)Q8NC01
FunCoupENSG00000150048
BioGRIDCLEC1A
STRING (EMBL)CLEC1A
ZODIACCLEC1A
Ontologies - Pathways
QuickGOQ8NC01
Ontology : AmiGOtransmembrane signaling receptor activity  intracellular  integral component of plasma membrane  defense response  cell surface receptor signaling pathway  carbohydrate binding  
Ontology : EGO-EBItransmembrane signaling receptor activity  intracellular  integral component of plasma membrane  defense response  cell surface receptor signaling pathway  carbohydrate binding  
NDEx NetworkCLEC1A
Atlas of Cancer Signalling NetworkCLEC1A
Wikipedia pathwaysCLEC1A
Orthology - Evolution
OrthoDB51267
GeneTree (enSembl)ENSG00000150048
Phylogenetic Trees/Animal Genes : TreeFamCLEC1A
HOVERGENQ8NC01
HOGENOMQ8NC01
Homologs : HomoloGeneCLEC1A
Homology/Alignments : Family Browser (UCSC)CLEC1A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC1A
dbVarCLEC1A
ClinVarCLEC1A
1000_GenomesCLEC1A 
Exome Variant ServerCLEC1A
ExAC (Exome Aggregation Consortium)CLEC1A (select the gene name)
Genetic variants : HAPMAP51267
Genomic Variants (DGV)CLEC1A [DGVbeta]
DECIPHERCLEC1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLEC1A 
Mutations
ICGC Data PortalCLEC1A 
TCGA Data PortalCLEC1A 
Broad Tumor PortalCLEC1A
OASIS PortalCLEC1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC1A
DgiDB (Drug Gene Interaction Database)CLEC1A
DoCM (Curated mutations)CLEC1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC1A (select a term)
intoGenCLEC1A
Cancer3DCLEC1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606782   
Orphanet
MedgenCLEC1A
Genetic Testing Registry CLEC1A
NextProtQ8NC01 [Medical]
TSGene51267
GENETestsCLEC1A
Target ValidationCLEC1A
Huge Navigator CLEC1A [HugePedia]
snp3D : Map Gene to Disease51267
BioCentury BCIQCLEC1A
ClinGenCLEC1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51267
Chemical/Pharm GKB GenePA142672097
Clinical trialCLEC1A
Miscellaneous
canSAR (ICR)CLEC1A (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC1A
EVEXCLEC1A
GoPubMedCLEC1A
iHOPCLEC1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:50 CEST 2017

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