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CLEC20A (C-type lectin domain containing 20A)

Identity

Alias_namesNCRNA00083
LINC00083
non-protein coding RNA 83
long intergenic non-protein coding RNA 83
C-type lectin domain family 20 member A
Alias_symbol (synonym)FLJ44005
RP4-593C16.2
Other alias
HGNC (Hugo) CLEC20A
LocusID (NCBI) 400797
Atlas_Id 79815
Location 1q25.2  [Link to chromosome band 1q25]
Location_base_pair Starts at 178493899 and ends at 178499634 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CLEC20A   34521
Cards
Entrez_Gene (NCBI)CLEC20A  400797  C-type lectin domain containing 20A
AliasesLINC00083; NCRNA00083
GeneCards (Weizmann)CLEC20A
Ensembl hg19 (Hinxton)ENSG00000188585 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188585 [Gene_View]  chr1:178493899-178499634 [Contig_View]  CLEC20A [Vega]
ICGC DataPortalENSG00000188585
TCGA cBioPortalCLEC20A
AceView (NCBI)CLEC20A
Genatlas (Paris)CLEC20A
WikiGenes400797
SOURCE (Princeton)CLEC20A
Genetics Home Reference (NIH)CLEC20A
Genomic and cartography
GoldenPath hg38 (UCSC)CLEC20A  -     chr1:178493899-178499634 -  1q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLEC20A  -     1q25.2   [Description]    (hg19-Feb_2009)
EnsemblCLEC20A - 1q25.2 [CytoView hg19]  CLEC20A - 1q25.2 [CytoView hg38]
Mapping of homologs : NCBICLEC20A [Mapview hg19]  CLEC20A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125993
RefSeq transcript (Entrez)NM_001001689
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLEC20A
Cluster EST : UnigeneHs.591460 [ NCBI ]
CGAP (NCI)Hs.591460
Alternative Splicing GalleryENSG00000188585
Gene ExpressionCLEC20A [ NCBI-GEO ]   CLEC20A [ EBI - ARRAY_EXPRESS ]   CLEC20A [ SEEK ]   CLEC20A [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC20A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400797
GTEX Portal (Tissue expression)CLEC20A
Human Protein AtlasENSG00000188585-CLEC20A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZU45   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZU45  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZU45
Splice isoforms : SwissVarQ6ZU45
PhosPhoSitePlusQ6ZU45
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    CTDL_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC20A
DMDM Disease mutations400797
Blocks (Seattle)CLEC20A
SuperfamilyQ6ZU45
Human Protein Atlas [tissue]ENSG00000188585-CLEC20A [tissue]
Peptide AtlasQ6ZU45
IPIIPI00418994   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZU45
IntAct (EBI)Q6ZU45
FunCoupENSG00000188585
BioGRIDCLEC20A
STRING (EMBL)CLEC20A
ZODIACCLEC20A
Ontologies - Pathways
QuickGOQ6ZU45
Ontology : AmiGOtransmembrane signaling receptor activity  integral component of plasma membrane  signal transduction  carbohydrate binding  
Ontology : EGO-EBItransmembrane signaling receptor activity  integral component of plasma membrane  signal transduction  carbohydrate binding  
NDEx NetworkCLEC20A
Atlas of Cancer Signalling NetworkCLEC20A
Wikipedia pathwaysCLEC20A
Orthology - Evolution
OrthoDB400797
GeneTree (enSembl)ENSG00000188585
Phylogenetic Trees/Animal Genes : TreeFamCLEC20A
HOVERGENQ6ZU45
HOGENOMQ6ZU45
Homologs : HomoloGeneCLEC20A
Homology/Alignments : Family Browser (UCSC)CLEC20A
Gene fusions - Rearrangements
Tumor Fusion PortalCLEC20A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC20A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC20A
dbVarCLEC20A
ClinVarCLEC20A
1000_GenomesCLEC20A 
Exome Variant ServerCLEC20A
ExAC (Exome Aggregation Consortium)ENSG00000188585
GNOMAD BrowserENSG00000188585
Genetic variants : HAPMAP400797
Genomic Variants (DGV)CLEC20A [DGVbeta]
DECIPHERCLEC20A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLEC20A 
Mutations
ICGC Data PortalCLEC20A 
TCGA Data PortalCLEC20A 
Broad Tumor PortalCLEC20A
OASIS PortalCLEC20A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCLEC20A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC20A
DgiDB (Drug Gene Interaction Database)CLEC20A
DoCM (Curated mutations)CLEC20A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC20A (select a term)
intoGenCLEC20A
Cancer3DCLEC20A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCLEC20A
MedgenCLEC20A
Genetic Testing Registry CLEC20A
NextProtQ6ZU45 [Medical]
TSGene400797
GENETestsCLEC20A
Target ValidationCLEC20A
Huge Navigator CLEC20A [HugePedia]
snp3D : Map Gene to Disease400797
BioCentury BCIQCLEC20A
ClinGenCLEC20A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400797
Clinical trialCLEC20A
Miscellaneous
canSAR (ICR)CLEC20A (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC20A
EVEXCLEC20A
GoPubMedCLEC20A
iHOPCLEC20A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 12:59:44 CET 2017

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