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CLEC2B (C-type lectin domain family 2 member B)

Identity

Alias_namesCLECSF2
C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 2 (activation-induced)
C-type lectin domain family 2, member B
Alias_symbol (synonym)AICL
HP10085
Other aliasIFNRG1
HGNC (Hugo) CLEC2B
LocusID (NCBI) 9976
Atlas_Id 52189
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 10004968 and ends at 10022458 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CLEC2B (12p13.31) / ADARB1 (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC2B   2053
Cards
Entrez_Gene (NCBI)CLEC2B  9976  C-type lectin domain family 2 member B
AliasesAICL; CLECSF2; HP10085; IFNRG1
GeneCards (Weizmann)CLEC2B
Ensembl hg19 (Hinxton)ENSG00000110852 [Gene_View]  chr12:10004968-10022458 [Contig_View]  CLEC2B [Vega]
Ensembl hg38 (Hinxton)ENSG00000110852 [Gene_View]  chr12:10004968-10022458 [Contig_View]  CLEC2B [Vega]
ICGC DataPortalENSG00000110852
TCGA cBioPortalCLEC2B
AceView (NCBI)CLEC2B
Genatlas (Paris)CLEC2B
WikiGenes9976
SOURCE (Princeton)CLEC2B
Genetics Home Reference (NIH)CLEC2B
Genomic and cartography
GoldenPath hg19 (UCSC)CLEC2B  -     chr12:10004968-10022458 -  12p13.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLEC2B  -     12p13.31   [Description]    (hg38-Dec_2013)
EnsemblCLEC2B - 12p13.31 [CytoView hg19]  CLEC2B - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBICLEC2B [Mapview hg19]  CLEC2B [Mapview hg38]
OMIM603242   
Gene and transcription
Genbank (Entrez)AB015628 AK307334 AK311232 AK313916 AL550908
RefSeq transcript (Entrez)NM_005127
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009714 NW_004929383
Consensus coding sequences : CCDS (NCBI)CLEC2B
Cluster EST : UnigeneHs.85201 [ NCBI ]
CGAP (NCI)Hs.85201
Alternative Splicing GalleryENSG00000110852
Gene ExpressionCLEC2B [ NCBI-GEO ]   CLEC2B [ EBI - ARRAY_EXPRESS ]   CLEC2B [ SEEK ]   CLEC2B [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9976
GTEX Portal (Tissue expression)CLEC2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92478   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92478  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92478
Splice isoforms : SwissVarQ92478
PhosPhoSitePlusQ92478
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC2B
DMDM Disease mutations9976
Blocks (Seattle)CLEC2B
SuperfamilyQ92478
Human Protein AtlasENSG00000110852
Peptide AtlasQ92478
HPRD09129
IPIIPI00021391   IPI00795714   
Protein Interaction databases
DIP (DOE-UCLA)Q92478
IntAct (EBI)Q92478
FunCoupENSG00000110852
BioGRIDCLEC2B
STRING (EMBL)CLEC2B
ZODIACCLEC2B
Ontologies - Pathways
QuickGOQ92478
Ontology : AmiGOplasma membrane  integral component of plasma membrane  carbohydrate binding  regulation of immune response  
Ontology : EGO-EBIplasma membrane  integral component of plasma membrane  carbohydrate binding  regulation of immune response  
NDEx NetworkCLEC2B
Atlas of Cancer Signalling NetworkCLEC2B
Wikipedia pathwaysCLEC2B
Orthology - Evolution
OrthoDB9976
GeneTree (enSembl)ENSG00000110852
Phylogenetic Trees/Animal Genes : TreeFamCLEC2B
HOVERGENQ92478
HOGENOMQ92478
Homologs : HomoloGeneCLEC2B
Homology/Alignments : Family Browser (UCSC)CLEC2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC2B
dbVarCLEC2B
ClinVarCLEC2B
1000_GenomesCLEC2B 
Exome Variant ServerCLEC2B
ExAC (Exome Aggregation Consortium)CLEC2B (select the gene name)
Genetic variants : HAPMAP9976
Genomic Variants (DGV)CLEC2B [DGVbeta]
DECIPHER (Syndromes)12:10004968-10022458  ENSG00000110852
CONAN: Copy Number AnalysisCLEC2B 
Mutations
ICGC Data PortalCLEC2B 
TCGA Data PortalCLEC2B 
Broad Tumor PortalCLEC2B
OASIS PortalCLEC2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC2B
DgiDB (Drug Gene Interaction Database)CLEC2B
DoCM (Curated mutations)CLEC2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC2B (select a term)
intoGenCLEC2B
Cancer3DCLEC2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603242   
Orphanet
MedgenCLEC2B
Genetic Testing Registry CLEC2B
NextProtQ92478 [Medical]
TSGene9976
GENETestsCLEC2B
Huge Navigator CLEC2B [HugePedia]
snp3D : Map Gene to Disease9976
BioCentury BCIQCLEC2B
ClinGenCLEC2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9976
Chemical/Pharm GKB GenePA26582
Clinical trialCLEC2B
Miscellaneous
canSAR (ICR)CLEC2B (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC2B
EVEXCLEC2B
GoPubMedCLEC2B
iHOPCLEC2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:00:47 CET 2017

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