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CLEC2D (C-type lectin domain family 2 member D)

Identity

Alias_namesC-type lectin superfamily 2, member D
C-type lectin domain family 2, member D
Alias_symbol (synonym)LLT1
CLAX
OCIL
Other alias
HGNC (Hugo) CLEC2D
LocusID (NCBI) 29121
Atlas_Id 61872
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 9669708 and ends at 9699555 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDC42 (1p36.12) / CLEC2D (12p13.31)CR1 (1q32.2) / CLEC2D (12p13.31)SCAF4 (21q22.11) / CLEC2D (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC2D   14351
Cards
Entrez_Gene (NCBI)CLEC2D  29121  C-type lectin domain family 2 member D
AliasesCLAX; LLT1; OCIL
GeneCards (Weizmann)CLEC2D
Ensembl hg19 (Hinxton)ENSG00000069493 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000069493 [Gene_View]  chr12:9669708-9699555 [Contig_View]  CLEC2D [Vega]
ICGC DataPortalENSG00000069493
TCGA cBioPortalCLEC2D
AceView (NCBI)CLEC2D
Genatlas (Paris)CLEC2D
WikiGenes29121
SOURCE (Princeton)CLEC2D
Genetics Home Reference (NIH)CLEC2D
Genomic and cartography
GoldenPath hg38 (UCSC)CLEC2D  -     chr12:9669708-9699555 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLEC2D  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblCLEC2D - 12p13.31 [CytoView hg19]  CLEC2D - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBICLEC2D [Mapview hg19]  CLEC2D [Mapview hg38]
OMIM605659   
Gene and transcription
Genbank (Entrez)AF133299 AF285087 AF285088 AF285089 AK310150
RefSeq transcript (Entrez)NM_001004419 NM_001004420 NM_001197317 NM_001197318 NM_001197319 NM_013269
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLEC2D
Cluster EST : UnigeneHs.268326 [ NCBI ]
CGAP (NCI)Hs.268326
Alternative Splicing GalleryENSG00000069493
Gene ExpressionCLEC2D [ NCBI-GEO ]   CLEC2D [ EBI - ARRAY_EXPRESS ]   CLEC2D [ SEEK ]   CLEC2D [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC2D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29121
GTEX Portal (Tissue expression)CLEC2D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHP7
Splice isoforms : SwissVarQ9UHP7
PhosPhoSitePlusQ9UHP7
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    CTDL_fold    NKR-like_CTLD   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC2D
DMDM Disease mutations29121
Blocks (Seattle)CLEC2D
PDB (SRS)4QKG    4QKH    4QKI    4QKJ    4WCO   
PDB (PDBSum)4QKG    4QKH    4QKI    4QKJ    4WCO   
PDB (IMB)4QKG    4QKH    4QKI    4QKJ    4WCO   
PDB (RSDB)4QKG    4QKH    4QKI    4QKJ    4WCO   
Structural Biology KnowledgeBase4QKG    4QKH    4QKI    4QKJ    4WCO   
SCOP (Structural Classification of Proteins)4QKG    4QKH    4QKI    4QKJ    4WCO   
CATH (Classification of proteins structures)4QKG    4QKH    4QKI    4QKJ    4WCO   
SuperfamilyQ9UHP7
Human Protein AtlasENSG00000069493
Peptide AtlasQ9UHP7
HPRD16134
IPIIPI00002277   IPI00030829   IPI00464954   IPI00791856   IPI00969468   IPI00969539   IPI00916627   IPI01014672   IPI01015217   IPI01013075   IPI01012227   IPI01011806   IPI01010119   IPI01011484   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHP7
IntAct (EBI)Q9UHP7
FunCoupENSG00000069493
BioGRIDCLEC2D
STRING (EMBL)CLEC2D
ZODIACCLEC2D
Ontologies - Pathways
QuickGOQ9UHP7
Ontology : AmiGOtransmembrane signaling receptor activity  endoplasmic reticulum  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  cell surface  membrane  carbohydrate binding  regulation of immune response  
Ontology : EGO-EBItransmembrane signaling receptor activity  endoplasmic reticulum  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  cell surface  membrane  carbohydrate binding  regulation of immune response  
NDEx NetworkCLEC2D
Atlas of Cancer Signalling NetworkCLEC2D
Wikipedia pathwaysCLEC2D
Orthology - Evolution
OrthoDB29121
GeneTree (enSembl)ENSG00000069493
Phylogenetic Trees/Animal Genes : TreeFamCLEC2D
HOVERGENQ9UHP7
HOGENOMQ9UHP7
Homologs : HomoloGeneCLEC2D
Homology/Alignments : Family Browser (UCSC)CLEC2D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC2D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC2D
dbVarCLEC2D
ClinVarCLEC2D
1000_GenomesCLEC2D 
Exome Variant ServerCLEC2D
ExAC (Exome Aggregation Consortium)CLEC2D (select the gene name)
Genetic variants : HAPMAP29121
Genomic Variants (DGV)CLEC2D [DGVbeta]
DECIPHERCLEC2D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLEC2D 
Mutations
ICGC Data PortalCLEC2D 
TCGA Data PortalCLEC2D 
Broad Tumor PortalCLEC2D
OASIS PortalCLEC2D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC2D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC2D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC2D
DgiDB (Drug Gene Interaction Database)CLEC2D
DoCM (Curated mutations)CLEC2D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC2D (select a term)
intoGenCLEC2D
Cancer3DCLEC2D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605659   
Orphanet
MedgenCLEC2D
Genetic Testing Registry CLEC2D
NextProtQ9UHP7 [Medical]
TSGene29121
GENETestsCLEC2D
Huge Navigator CLEC2D [HugePedia]
snp3D : Map Gene to Disease29121
BioCentury BCIQCLEC2D
ClinGenCLEC2D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29121
Chemical/Pharm GKB GenePA142672100
Clinical trialCLEC2D
Miscellaneous
canSAR (ICR)CLEC2D (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC2D
EVEXCLEC2D
GoPubMedCLEC2D
iHOPCLEC2D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:06:07 CEST 2017

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