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CLEC2L (C-type lectin domain family 2, member L)

Identity

Alias_namesC-type lectin domain family 2, member L
Alias_symbol (synonym)FLJ32986
Other alias-
HGNC (Hugo) CLEC2L
LocusID (NCBI) 154790
Atlas_Id 61873
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 139208674 and ends at 139229731 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC2L   21969
Cards
Entrez_Gene (NCBI)CLEC2L  154790  C-type lectin domain family 2, member L
Aliases
GeneCards (Weizmann)CLEC2L
Ensembl hg19 (Hinxton)ENSG00000236279 [Gene_View]  chr7:139208674-139229731 [Contig_View]  CLEC2L [Vega]
Ensembl hg38 (Hinxton)ENSG00000236279 [Gene_View]  chr7:139208674-139229731 [Contig_View]  CLEC2L [Vega]
ICGC DataPortalENSG00000236279
TCGA cBioPortalCLEC2L
AceView (NCBI)CLEC2L
Genatlas (Paris)CLEC2L
WikiGenes154790
SOURCE (Princeton)CLEC2L
Genetics Home Reference (NIH)CLEC2L
Genomic and cartography
GoldenPath hg19 (UCSC)CLEC2L  -     chr7:139208674-139229731 +  7q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLEC2L  -     7q34   [Description]    (hg38-Dec_2013)
EnsemblCLEC2L - 7q34 [CytoView hg19]  CLEC2L - 7q34 [CytoView hg38]
Mapping of homologs : NCBICLEC2L [Mapview hg19]  CLEC2L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057548
RefSeq transcript (Entrez)NM_001080511
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)CLEC2L
Cluster EST : UnigeneHs.57806 [ NCBI ]
CGAP (NCI)Hs.57806
Alternative Splicing GalleryENSG00000236279
Gene ExpressionCLEC2L [ NCBI-GEO ]   CLEC2L [ EBI - ARRAY_EXPRESS ]   CLEC2L [ SEEK ]   CLEC2L [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC2L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)154790
GTEX Portal (Tissue expression)CLEC2L
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7M8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7M8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7M8
Splice isoforms : SwissVarP0C7M8
PhosPhoSitePlusP0C7M8
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC2L
DMDM Disease mutations154790
Blocks (Seattle)CLEC2L
SuperfamilyP0C7M8
Human Protein AtlasENSG00000236279
Peptide AtlasP0C7M8
IPIIPI00455070   IPI00977304   
Protein Interaction databases
DIP (DOE-UCLA)P0C7M8
IntAct (EBI)P0C7M8
FunCoupENSG00000236279
BioGRIDCLEC2L
STRING (EMBL)CLEC2L
ZODIACCLEC2L
Ontologies - Pathways
QuickGOP0C7M8
Ontology : AmiGOintegral component of membrane  carbohydrate binding  
Ontology : EGO-EBIintegral component of membrane  carbohydrate binding  
NDEx NetworkCLEC2L
Atlas of Cancer Signalling NetworkCLEC2L
Wikipedia pathwaysCLEC2L
Orthology - Evolution
OrthoDB154790
GeneTree (enSembl)ENSG00000236279
Phylogenetic Trees/Animal Genes : TreeFamCLEC2L
HOVERGENP0C7M8
HOGENOMP0C7M8
Homologs : HomoloGeneCLEC2L
Homology/Alignments : Family Browser (UCSC)CLEC2L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC2L
dbVarCLEC2L
ClinVarCLEC2L
1000_GenomesCLEC2L 
Exome Variant ServerCLEC2L
ExAC (Exome Aggregation Consortium)CLEC2L (select the gene name)
Genetic variants : HAPMAP154790
Genomic Variants (DGV)CLEC2L [DGVbeta]
DECIPHER (Syndromes)7:139208674-139229731  ENSG00000236279
CONAN: Copy Number AnalysisCLEC2L 
Mutations
ICGC Data PortalCLEC2L 
TCGA Data PortalCLEC2L 
Broad Tumor PortalCLEC2L
OASIS PortalCLEC2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC2L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC2L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC2L
DgiDB (Drug Gene Interaction Database)CLEC2L
DoCM (Curated mutations)CLEC2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC2L (select a term)
intoGenCLEC2L
Cancer3DCLEC2L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLEC2L
Genetic Testing Registry CLEC2L
NextProtP0C7M8 [Medical]
TSGene154790
GENETestsCLEC2L
Huge Navigator CLEC2L [HugePedia]
snp3D : Map Gene to Disease154790
BioCentury BCIQCLEC2L
ClinGenCLEC2L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD154790
Chemical/Pharm GKB GenePA142672101
Clinical trialCLEC2L
Miscellaneous
canSAR (ICR)CLEC2L (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC2L
EVEXCLEC2L
GoPubMedCLEC2L
iHOPCLEC2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 11:59:38 CET 2017

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