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CLEC3A (C-type lectin domain family 3 member A)

Identity

Alias_namesCLECSF1
C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 1 (cartilage-derived)
C-type lectin domain family 3, member A
Other alias
HGNC (Hugo) CLEC3A
LocusID (NCBI) 10143
Atlas_Id 50972
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 78029089 and ends at 78032104 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC3A   2052
Cards
Entrez_Gene (NCBI)CLEC3A  10143  C-type lectin domain family 3 member A
AliasesCLECSF1
GeneCards (Weizmann)CLEC3A
Ensembl hg19 (Hinxton)ENSG00000166509 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166509 [Gene_View]  chr16:78029089-78032104 [Contig_View]  CLEC3A [Vega]
ICGC DataPortalENSG00000166509
TCGA cBioPortalCLEC3A
AceView (NCBI)CLEC3A
Genatlas (Paris)CLEC3A
WikiGenes10143
SOURCE (Princeton)CLEC3A
Genetics Home Reference (NIH)CLEC3A
Genomic and cartography
GoldenPath hg38 (UCSC)CLEC3A  -     chr16:78029089-78032104 +  16q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLEC3A  -     16q23.1   [Description]    (hg19-Feb_2009)
EnsemblCLEC3A - 16q23.1 [CytoView hg19]  CLEC3A - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBICLEC3A [Mapview hg19]  CLEC3A [Mapview hg38]
OMIM613588   
Gene and transcription
Genbank (Entrez)AA399390 AI927004 AK310847 AK313316 AY358376
RefSeq transcript (Entrez)NM_001244755 NM_005752
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLEC3A
Cluster EST : UnigeneHs.735656 [ NCBI ]
CGAP (NCI)Hs.735656
Alternative Splicing GalleryENSG00000166509
Gene ExpressionCLEC3A [ NCBI-GEO ]   CLEC3A [ EBI - ARRAY_EXPRESS ]   CLEC3A [ SEEK ]   CLEC3A [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10143
GTEX Portal (Tissue expression)CLEC3A
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75596   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75596  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75596
Splice isoforms : SwissVarO75596
PhosPhoSitePlusO75596
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    C-type_lectin_CS    CTDL_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC3A
DMDM Disease mutations10143
Blocks (Seattle)CLEC3A
SuperfamilyO75596
Human Protein AtlasENSG00000166509
Peptide AtlasO75596
HPRD13072
IPIIPI00024752   
Protein Interaction databases
DIP (DOE-UCLA)O75596
IntAct (EBI)O75596
FunCoupENSG00000166509
BioGRIDCLEC3A
STRING (EMBL)CLEC3A
ZODIACCLEC3A
Ontologies - Pathways
QuickGOO75596
Ontology : AmiGOskeletal system development  extracellular region  carbohydrate binding  
Ontology : EGO-EBIskeletal system development  extracellular region  carbohydrate binding  
NDEx NetworkCLEC3A
Atlas of Cancer Signalling NetworkCLEC3A
Wikipedia pathwaysCLEC3A
Orthology - Evolution
OrthoDB10143
GeneTree (enSembl)ENSG00000166509
Phylogenetic Trees/Animal Genes : TreeFamCLEC3A
HOVERGENO75596
HOGENOMO75596
Homologs : HomoloGeneCLEC3A
Homology/Alignments : Family Browser (UCSC)CLEC3A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC3A
dbVarCLEC3A
ClinVarCLEC3A
1000_GenomesCLEC3A 
Exome Variant ServerCLEC3A
ExAC (Exome Aggregation Consortium)CLEC3A (select the gene name)
Genetic variants : HAPMAP10143
Genomic Variants (DGV)CLEC3A [DGVbeta]
DECIPHERCLEC3A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLEC3A 
Mutations
ICGC Data PortalCLEC3A 
TCGA Data PortalCLEC3A 
Broad Tumor PortalCLEC3A
OASIS PortalCLEC3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC3A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC3A
DgiDB (Drug Gene Interaction Database)CLEC3A
DoCM (Curated mutations)CLEC3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC3A (select a term)
intoGenCLEC3A
Cancer3DCLEC3A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613588   
Orphanet
MedgenCLEC3A
Genetic Testing Registry CLEC3A
NextProtO75596 [Medical]
TSGene10143
GENETestsCLEC3A
Target ValidationCLEC3A
Huge Navigator CLEC3A [HugePedia]
snp3D : Map Gene to Disease10143
BioCentury BCIQCLEC3A
ClinGenCLEC3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10143
Chemical/Pharm GKB GenePA26578
Clinical trialCLEC3A
Miscellaneous
canSAR (ICR)CLEC3A (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC3A
EVEXCLEC3A
GoPubMedCLEC3A
iHOPCLEC3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:28:40 CEST 2017

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