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CLEC3B (C-type lectin domain family 3 member B)

Identity

Alias (NCBI)TN
TNA
HGNC (Hugo) CLEC3B
HGNC Alias symbTN
HGNC Previous nameTNA
HGNC Previous nametetranectin (plasminogen binding protein)
 C-type lectin domain family 3, member B
LocusID (NCBI) 7123
Atlas_Id 43721
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 45026303 and ends at 45036071 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CLEC3B (3p21.31) / NPIPB7 (16q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CLEC3B   11891
Cards
Entrez_Gene (NCBI)CLEC3B    C-type lectin domain family 3 member B
AliasesTN; TNA
GeneCards (Weizmann)CLEC3B
Ensembl hg19 (Hinxton)ENSG00000163815 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163815 [Gene_View]  ENSG00000163815 [Sequence]  chr3:45026303-45036071 [Contig_View]  CLEC3B [Vega]
ICGC DataPortalENSG00000163815
TCGA cBioPortalCLEC3B
AceView (NCBI)CLEC3B
Genatlas (Paris)CLEC3B
SOURCE (Princeton)CLEC3B
Genetics Home Reference (NIH)CLEC3B
Genomic and cartography
GoldenPath hg38 (UCSC)CLEC3B  -     chr3:45026303-45036071 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLEC3B  -     3p21.31   [Description]    (hg19-Feb_2009)
GoldenPathCLEC3B - 3p21.31 [CytoView hg19]  CLEC3B - 3p21.31 [CytoView hg38]
ImmunoBaseENSG00000163815
Genome Data Viewer NCBICLEC3B [Mapview hg19]  
OMIM187520   
Gene and transcription
Genbank (Entrez)AK312093 BC011024 BI826174 BI826652 BI837909
RefSeq transcript (Entrez)NM_001308394 NM_003278
Consensus coding sequences : CCDS (NCBI)CLEC3B
Gene ExpressionCLEC3B [ NCBI-GEO ]   CLEC3B [ EBI - ARRAY_EXPRESS ]   CLEC3B [ SEEK ]   CLEC3B [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC3B [ Firebrowse - Broad ]
GenevisibleExpression of CLEC3B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7123
GTEX Portal (Tissue expression)CLEC3B
Human Protein AtlasENSG00000163815-CLEC3B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05452   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP05452  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP05452
PhosPhoSitePlusP05452
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link_sf    C-type_lectin_CS    CTDL_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC3B
PDB (RSDB)1HTN    1RJH    1TN3    3L9J   
PDB Europe1HTN    1RJH    1TN3    3L9J   
PDB (PDBSum)1HTN    1RJH    1TN3    3L9J   
PDB (IMB)1HTN    1RJH    1TN3    3L9J   
Structural Biology KnowledgeBase1HTN    1RJH    1TN3    3L9J   
SCOP (Structural Classification of Proteins)1HTN    1RJH    1TN3    3L9J   
CATH (Classification of proteins structures)1HTN    1RJH    1TN3    3L9J   
SuperfamilyP05452
AlphaFold pdb e-kbP05452   
Human Protein Atlas [tissue]ENSG00000163815-CLEC3B [tissue]
HPRD01759
Protein Interaction databases
DIP (DOE-UCLA)P05452
IntAct (EBI)P05452
BioGRIDCLEC3B
STRING (EMBL)CLEC3B
ZODIACCLEC3B
Ontologies - Pathways
QuickGOP05452
Ontology : AmiGOossification  ossification  granular component  platelet degranulation  calcium ion binding  extracellular region  extracellular region  extracellular region  extracellular space  extracellular space  extracellular space  cytoplasm  heparin binding  positive regulation of plasminogen activation  carbohydrate binding  bone mineralization  bone mineralization  bone mineralization  platelet dense granule lumen  kringle domain binding  collagen-containing extracellular matrix  collagen-containing extracellular matrix  extracellular exosome  cellular response to organic substance  cellular response to transforming growth factor beta stimulus  
Ontology : EGO-EBIossification  ossification  granular component  platelet degranulation  calcium ion binding  extracellular region  extracellular region  extracellular region  extracellular space  extracellular space  extracellular space  cytoplasm  heparin binding  positive regulation of plasminogen activation  carbohydrate binding  bone mineralization  bone mineralization  bone mineralization  platelet dense granule lumen  kringle domain binding  collagen-containing extracellular matrix  collagen-containing extracellular matrix  extracellular exosome  cellular response to organic substance  cellular response to transforming growth factor beta stimulus  
NDEx NetworkCLEC3B
Atlas of Cancer Signalling NetworkCLEC3B
Wikipedia pathwaysCLEC3B
Orthology - Evolution
OrthoDB7123
GeneTree (enSembl)ENSG00000163815
Phylogenetic Trees/Animal Genes : TreeFamCLEC3B
Homologs : HomoloGeneCLEC3B
Homology/Alignments : Family Browser (UCSC)CLEC3B
Gene fusions - Rearrangements
Fusion : QuiverCLEC3B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC3B
dbVarCLEC3B
ClinVarCLEC3B
MonarchCLEC3B
1000_GenomesCLEC3B 
Exome Variant ServerCLEC3B
GNOMAD BrowserENSG00000163815
Varsome BrowserCLEC3B
ACMGCLEC3B variants
VarityP05452
Genomic Variants (DGV)CLEC3B [DGVbeta]
DECIPHERCLEC3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLEC3B 
Mutations
ICGC Data PortalCLEC3B 
TCGA Data PortalCLEC3B 
Broad Tumor PortalCLEC3B
OASIS PortalCLEC3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC3B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCLEC3B
Mutations and Diseases : HGMDCLEC3B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCLEC3B
DgiDB (Drug Gene Interaction Database)CLEC3B
DoCM (Curated mutations)CLEC3B
CIViC (Clinical Interpretations of Variants in Cancer)CLEC3B
Cancer3DCLEC3B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM187520   
Orphanet
DisGeNETCLEC3B
MedgenCLEC3B
Genetic Testing Registry CLEC3B
NextProtP05452 [Medical]
GENETestsCLEC3B
Target ValidationCLEC3B
Huge Navigator CLEC3B [HugePedia]
ClinGenCLEC3B
Clinical trials, drugs, therapy
MyCancerGenomeCLEC3B
Protein Interactions : CTDCLEC3B
Pharm GKB GenePA36590
PharosP05452
Clinical trialCLEC3B
Miscellaneous
canSAR (ICR)CLEC3B
HarmonizomeCLEC3B
DataMed IndexCLEC3B
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCLEC3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:04:17 CEST 2021

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