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CLEC4D (C-type lectin domain family 4 member D)

Identity

Alias_namesCLECSF8
C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 8
C-type lectin domain family 4, member D
Alias_symbol (synonym)Mpcl
CD368
Other aliasCLEC-6
CLEC6
MCL
MPCL
HGNC (Hugo) CLEC4D
LocusID (NCBI) 338339
Atlas_Id 61875
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 8513540 and ends at 8522364 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC4D   14554
Cards
Entrez_Gene (NCBI)CLEC4D  338339  C-type lectin domain family 4 member D
AliasesCD368; CLEC-6; CLEC6; CLECSF8; 
MCL; MPCL
GeneCards (Weizmann)CLEC4D
Ensembl hg19 (Hinxton)ENSG00000166527 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166527 [Gene_View]  chr12:8513540-8522364 [Contig_View]  CLEC4D [Vega]
ICGC DataPortalENSG00000166527
TCGA cBioPortalCLEC4D
AceView (NCBI)CLEC4D
Genatlas (Paris)CLEC4D
WikiGenes338339
SOURCE (Princeton)CLEC4D
Genetics Home Reference (NIH)CLEC4D
Genomic and cartography
GoldenPath hg38 (UCSC)CLEC4D  -     chr12:8513540-8522364 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLEC4D  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblCLEC4D - 12p13.31 [CytoView hg19]  CLEC4D - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBICLEC4D [Mapview hg19]  CLEC4D [Mapview hg38]
OMIM609964   
Gene and transcription
Genbank (Entrez)AF411850 AK314071 AY115592 AY297446 AY486482
RefSeq transcript (Entrez)NM_080387
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLEC4D
Cluster EST : UnigeneHs.351811 [ NCBI ]
CGAP (NCI)Hs.351811
Alternative Splicing GalleryENSG00000166527
Gene ExpressionCLEC4D [ NCBI-GEO ]   CLEC4D [ EBI - ARRAY_EXPRESS ]   CLEC4D [ SEEK ]   CLEC4D [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC4D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338339
GTEX Portal (Tissue expression)CLEC4D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXI8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXI8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXI8
Splice isoforms : SwissVarQ8WXI8
PhosPhoSitePlusQ8WXI8
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    CD209-like_CTLD    CTDL_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC4D
DMDM Disease mutations338339
Blocks (Seattle)CLEC4D
PDB (SRS)2LS8    3WHD   
PDB (PDBSum)2LS8    3WHD   
PDB (IMB)2LS8    3WHD   
PDB (RSDB)2LS8    3WHD   
Structural Biology KnowledgeBase2LS8    3WHD   
SCOP (Structural Classification of Proteins)2LS8    3WHD   
CATH (Classification of proteins structures)2LS8    3WHD   
SuperfamilyQ8WXI8
Human Protein AtlasENSG00000166527
Peptide AtlasQ8WXI8
HPRD13074
IPIIPI00329001   IPI00746061   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXI8
IntAct (EBI)Q8WXI8
FunCoupENSG00000166527
BioGRIDCLEC4D
STRING (EMBL)CLEC4D
ZODIACCLEC4D
Ontologies - Pathways
QuickGOQ8WXI8
Ontology : AmiGOstimulatory C-type lectin receptor signaling pathway  adaptive immune response  T cell differentiation involved in immune response  protein binding  plasma membrane  integral component of membrane  carbohydrate binding  immunoglobulin receptor binding  specific granule membrane  Fc-gamma receptor signaling pathway  defense response to bacterium  neutrophil degranulation  innate immune response  tertiary granule membrane  ficolin-1-rich granule membrane  
Ontology : EGO-EBIstimulatory C-type lectin receptor signaling pathway  adaptive immune response  T cell differentiation involved in immune response  protein binding  plasma membrane  integral component of membrane  carbohydrate binding  immunoglobulin receptor binding  specific granule membrane  Fc-gamma receptor signaling pathway  defense response to bacterium  neutrophil degranulation  innate immune response  tertiary granule membrane  ficolin-1-rich granule membrane  
NDEx NetworkCLEC4D
Atlas of Cancer Signalling NetworkCLEC4D
Wikipedia pathwaysCLEC4D
Orthology - Evolution
OrthoDB338339
GeneTree (enSembl)ENSG00000166527
Phylogenetic Trees/Animal Genes : TreeFamCLEC4D
HOVERGENQ8WXI8
HOGENOMQ8WXI8
Homologs : HomoloGeneCLEC4D
Homology/Alignments : Family Browser (UCSC)CLEC4D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC4D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC4D
dbVarCLEC4D
ClinVarCLEC4D
1000_GenomesCLEC4D 
Exome Variant ServerCLEC4D
ExAC (Exome Aggregation Consortium)CLEC4D (select the gene name)
Genetic variants : HAPMAP338339
Genomic Variants (DGV)CLEC4D [DGVbeta]
DECIPHERCLEC4D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLEC4D 
Mutations
ICGC Data PortalCLEC4D 
TCGA Data PortalCLEC4D 
Broad Tumor PortalCLEC4D
OASIS PortalCLEC4D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC4D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC4D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC4D
DgiDB (Drug Gene Interaction Database)CLEC4D
DoCM (Curated mutations)CLEC4D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC4D (select a term)
intoGenCLEC4D
Cancer3DCLEC4D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609964   
Orphanet
MedgenCLEC4D
Genetic Testing Registry CLEC4D
NextProtQ8WXI8 [Medical]
TSGene338339
GENETestsCLEC4D
Huge Navigator CLEC4D [HugePedia]
snp3D : Map Gene to Disease338339
BioCentury BCIQCLEC4D
ClinGenCLEC4D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338339
Chemical/Pharm GKB GenePA134916109
Clinical trialCLEC4D
Miscellaneous
canSAR (ICR)CLEC4D (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC4D
EVEXCLEC4D
GoPubMedCLEC4D
iHOPCLEC4D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:06:08 CEST 2017

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