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CLEC4F (C-type lectin domain family 4 member F)

Identity

Alias_namesCLECSF13
C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13
C-type lectin domain family 4, member F
Alias_symbol (synonym)FLJ39110
KCLR
Other alias
HGNC (Hugo) CLEC4F
LocusID (NCBI) 165530
Atlas_Id 61877
Location 2p13.3  [Link to chromosome band 2p13]
Location_base_pair Starts at 70808645 and ends at 70820600 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC4F   25357
Cards
Entrez_Gene (NCBI)CLEC4F  165530  C-type lectin domain family 4 member F
AliasesCLECSF13; KCLR
GeneCards (Weizmann)CLEC4F
Ensembl hg19 (Hinxton)ENSG00000152672 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152672 [Gene_View]  chr2:70808645-70820600 [Contig_View]  CLEC4F [Vega]
ICGC DataPortalENSG00000152672
TCGA cBioPortalCLEC4F
AceView (NCBI)CLEC4F
Genatlas (Paris)CLEC4F
WikiGenes165530
SOURCE (Princeton)CLEC4F
Genetics Home Reference (NIH)CLEC4F
Genomic and cartography
GoldenPath hg38 (UCSC)CLEC4F  -     chr2:70808645-70820600 -  2p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLEC4F  -     2p13.3   [Description]    (hg19-Feb_2009)
EnsemblCLEC4F - 2p13.3 [CytoView hg19]  CLEC4F - 2p13.3 [CytoView hg38]
Mapping of homologs : NCBICLEC4F [Mapview hg19]  CLEC4F [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096429 AK301242 BC139723 BC144652 BU740367
RefSeq transcript (Entrez)NM_001258027 NM_001321308 NM_173535
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLEC4F
Cluster EST : UnigeneHs.681239 [ NCBI ]
CGAP (NCI)Hs.681239
Alternative Splicing GalleryENSG00000152672
Gene ExpressionCLEC4F [ NCBI-GEO ]   CLEC4F [ EBI - ARRAY_EXPRESS ]   CLEC4F [ SEEK ]   CLEC4F [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC4F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)165530
GTEX Portal (Tissue expression)CLEC4F
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1N0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1N0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1N0
Splice isoforms : SwissVarQ8N1N0
PhosPhoSitePlusQ8N1N0
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    CD209-like_CTLD    CTDL_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC4F
DMDM Disease mutations165530
Blocks (Seattle)CLEC4F
SuperfamilyQ8N1N0
Human Protein AtlasENSG00000152672
Peptide AtlasQ8N1N0
HPRD13073
IPIIPI00166202   IPI00927549   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1N0
IntAct (EBI)Q8N1N0
FunCoupENSG00000152672
BioGRIDCLEC4F
STRING (EMBL)CLEC4F
ZODIACCLEC4F
Ontologies - Pathways
QuickGOQ8N1N0
Ontology : AmiGOendocytosis  integral component of membrane  carbohydrate binding  
Ontology : EGO-EBIendocytosis  integral component of membrane  carbohydrate binding  
NDEx NetworkCLEC4F
Atlas of Cancer Signalling NetworkCLEC4F
Wikipedia pathwaysCLEC4F
Orthology - Evolution
OrthoDB165530
GeneTree (enSembl)ENSG00000152672
Phylogenetic Trees/Animal Genes : TreeFamCLEC4F
HOVERGENQ8N1N0
HOGENOMQ8N1N0
Homologs : HomoloGeneCLEC4F
Homology/Alignments : Family Browser (UCSC)CLEC4F
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC4F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC4F
dbVarCLEC4F
ClinVarCLEC4F
1000_GenomesCLEC4F 
Exome Variant ServerCLEC4F
ExAC (Exome Aggregation Consortium)CLEC4F (select the gene name)
Genetic variants : HAPMAP165530
Genomic Variants (DGV)CLEC4F [DGVbeta]
DECIPHERCLEC4F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLEC4F 
Mutations
ICGC Data PortalCLEC4F 
TCGA Data PortalCLEC4F 
Broad Tumor PortalCLEC4F
OASIS PortalCLEC4F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC4F  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC4F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC4F
DgiDB (Drug Gene Interaction Database)CLEC4F
DoCM (Curated mutations)CLEC4F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC4F (select a term)
intoGenCLEC4F
Cancer3DCLEC4F(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLEC4F
Genetic Testing Registry CLEC4F
NextProtQ8N1N0 [Medical]
TSGene165530
GENETestsCLEC4F
Target ValidationCLEC4F
Huge Navigator CLEC4F [HugePedia]
snp3D : Map Gene to Disease165530
BioCentury BCIQCLEC4F
ClinGenCLEC4F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD165530
Chemical/Pharm GKB GenePA134968842
Clinical trialCLEC4F
Miscellaneous
canSAR (ICR)CLEC4F (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC4F
EVEXCLEC4F
GoPubMedCLEC4F
iHOPCLEC4F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:52 CEST 2017

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