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CLEC4G (C-type lectin domain family 4 member G)

Identity

Alias_namesC-type lectin superfamily 4, member G
C-type lectin domain family 4, member G
Alias_symbol (synonym)UNQ431
LSECtin
Other aliasDTTR431
LP2698
HGNC (Hugo) CLEC4G
LocusID (NCBI) 339390
Atlas_Id 53604
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7728957 and ends at 7732171 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC4G   24591
Cards
Entrez_Gene (NCBI)CLEC4G  339390  C-type lectin domain family 4 member G
AliasesDTTR431; LP2698; LSECtin; UNQ431
GeneCards (Weizmann)CLEC4G
Ensembl hg19 (Hinxton)ENSG00000182566 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182566 [Gene_View]  chr19:7728957-7732171 [Contig_View]  CLEC4G [Vega]
ICGC DataPortalENSG00000182566
TCGA cBioPortalCLEC4G
AceView (NCBI)CLEC4G
Genatlas (Paris)CLEC4G
WikiGenes339390
SOURCE (Princeton)CLEC4G
Genetics Home Reference (NIH)CLEC4G
Genomic and cartography
GoldenPath hg38 (UCSC)CLEC4G  -     chr19:7728957-7732171 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLEC4G  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblCLEC4G - 19p13.2 [CytoView hg19]  CLEC4G - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBICLEC4G [Mapview hg19]  CLEC4G [Mapview hg38]
OMIM616256   
Gene and transcription
Genbank (Entrez)AY203939 AY358431 AY423706 BC039679 BC093691
RefSeq transcript (Entrez)NM_001244856 NM_198492
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLEC4G
Cluster EST : UnigeneHs.220649 [ NCBI ]
CGAP (NCI)Hs.220649
Alternative Splicing GalleryENSG00000182566
Gene ExpressionCLEC4G [ NCBI-GEO ]   CLEC4G [ EBI - ARRAY_EXPRESS ]   CLEC4G [ SEEK ]   CLEC4G [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC4G [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339390
GTEX Portal (Tissue expression)CLEC4G
Human Protein AtlasENSG00000182566-CLEC4G [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXB4
Splice isoforms : SwissVarQ6UXB4
PhosPhoSitePlusQ6UXB4
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    C-type_lectin_CS    CTDL_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC4G
DMDM Disease mutations339390
Blocks (Seattle)CLEC4G
SuperfamilyQ6UXB4
Human Protein Atlas [tissue]ENSG00000182566-CLEC4G [tissue]
Peptide AtlasQ6UXB4
HPRD16721
IPIIPI00243602   IPI00428735   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXB4
IntAct (EBI)Q6UXB4
FunCoupENSG00000182566
BioGRIDCLEC4G
STRING (EMBL)CLEC4G
ZODIACCLEC4G
Ontologies - Pathways
QuickGOQ6UXB4
Ontology : AmiGOvirus receptor activity  negative regulation of T cell mediated immunity  protein binding  plasma membrane  integral component of membrane  polysaccharide binding  negative regulation of T cell proliferation  viral entry into host cell  
Ontology : EGO-EBIvirus receptor activity  negative regulation of T cell mediated immunity  protein binding  plasma membrane  integral component of membrane  polysaccharide binding  negative regulation of T cell proliferation  viral entry into host cell  
NDEx NetworkCLEC4G
Atlas of Cancer Signalling NetworkCLEC4G
Wikipedia pathwaysCLEC4G
Orthology - Evolution
OrthoDB339390
GeneTree (enSembl)ENSG00000182566
Phylogenetic Trees/Animal Genes : TreeFamCLEC4G
HOVERGENQ6UXB4
HOGENOMQ6UXB4
Homologs : HomoloGeneCLEC4G
Homology/Alignments : Family Browser (UCSC)CLEC4G
Gene fusions - Rearrangements
Tumor Fusion PortalCLEC4G
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC4G [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC4G
dbVarCLEC4G
ClinVarCLEC4G
1000_GenomesCLEC4G 
Exome Variant ServerCLEC4G
ExAC (Exome Aggregation Consortium)ENSG00000182566
GNOMAD BrowserENSG00000182566
Genetic variants : HAPMAP339390
Genomic Variants (DGV)CLEC4G [DGVbeta]
DECIPHERCLEC4G [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLEC4G 
Mutations
ICGC Data PortalCLEC4G 
TCGA Data PortalCLEC4G 
Broad Tumor PortalCLEC4G
OASIS PortalCLEC4G [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC4G  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC4G
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC4G
DgiDB (Drug Gene Interaction Database)CLEC4G
DoCM (Curated mutations)CLEC4G (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC4G (select a term)
intoGenCLEC4G
Cancer3DCLEC4G(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616256   
Orphanet
DisGeNETCLEC4G
MedgenCLEC4G
Genetic Testing Registry CLEC4G
NextProtQ6UXB4 [Medical]
TSGene339390
GENETestsCLEC4G
Target ValidationCLEC4G
Huge Navigator CLEC4G [HugePedia]
snp3D : Map Gene to Disease339390
BioCentury BCIQCLEC4G
ClinGenCLEC4G
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339390
Chemical/Pharm GKB GenePA142672104
Clinical trialCLEC4G
Miscellaneous
canSAR (ICR)CLEC4G (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC4G
EVEXCLEC4G
GoPubMedCLEC4G
iHOPCLEC4G
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:08:04 CET 2017

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