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CLEC6A (C-type lectin domain family 6, member A)

Identity

Alias_namesCLECSF10
C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 10
C-type lectin domain family 6, member A
Alias_symbol (synonym)dectin-2
Other aliasCLEC4N
HGNC (Hugo) CLEC6A
LocusID (NCBI) 93978
Atlas_Id 61880
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 8608591 and ends at 8630926 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC6A   14556
Cards
Entrez_Gene (NCBI)CLEC6A  93978  C-type lectin domain family 6, member A
AliasesCLEC4N; CLECSF10
GeneCards (Weizmann)CLEC6A
Ensembl hg19 (Hinxton)ENSG00000205846 [Gene_View]  chr12:8608591-8630926 [Contig_View]  CLEC6A [Vega]
Ensembl hg38 (Hinxton)ENSG00000205846 [Gene_View]  chr12:8608591-8630926 [Contig_View]  CLEC6A [Vega]
ICGC DataPortalENSG00000205846
TCGA cBioPortalCLEC6A
AceView (NCBI)CLEC6A
Genatlas (Paris)CLEC6A
WikiGenes93978
SOURCE (Princeton)CLEC6A
Genetics Home Reference (NIH)CLEC6A
Genomic and cartography
GoldenPath hg19 (UCSC)CLEC6A  -     chr12:8608591-8630926 +  12p13.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLEC6A  -     12p13.31   [Description]    (hg38-Dec_2013)
EnsemblCLEC6A - 12p13.31 [CytoView hg19]  CLEC6A - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBICLEC6A [Mapview hg19]  CLEC6A [Mapview hg38]
OMIM613579   
Gene and transcription
Genbank (Entrez)AK308011 AY321309 AY365135 BC132933 BC132935
RefSeq transcript (Entrez)NM_001007033
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009714 NW_004929383
Consensus coding sequences : CCDS (NCBI)CLEC6A
Cluster EST : UnigeneHs.591147 [ NCBI ]
CGAP (NCI)Hs.591147
Alternative Splicing GalleryENSG00000205846
Gene ExpressionCLEC6A [ NCBI-GEO ]   CLEC6A [ EBI - ARRAY_EXPRESS ]   CLEC6A [ SEEK ]   CLEC6A [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC6A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93978
GTEX Portal (Tissue expression)CLEC6A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6EIG7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6EIG7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6EIG7
Splice isoforms : SwissVarQ6EIG7
PhosPhoSitePlusQ6EIG7
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC6A
DMDM Disease mutations93978
Blocks (Seattle)CLEC6A
SuperfamilyQ6EIG7
Human Protein AtlasENSG00000205846
Peptide AtlasQ6EIG7
HPRD16722
IPIIPI00455618   IPI01018627   
Protein Interaction databases
DIP (DOE-UCLA)Q6EIG7
IntAct (EBI)Q6EIG7
FunCoupENSG00000205846
BioGRIDCLEC6A
STRING (EMBL)CLEC6A
ZODIACCLEC6A
Ontologies - Pathways
QuickGOQ6EIG7
Ontology : AmiGOstimulatory C-type lectin receptor signaling pathway  plasma membrane  integral component of membrane  carbohydrate binding  positive regulation of I-kappaB kinase/NF-kappaB signaling  innate immune response  innate immune response  positive regulation of cytokine secretion  defense response to fungus  
Ontology : EGO-EBIstimulatory C-type lectin receptor signaling pathway  plasma membrane  integral component of membrane  carbohydrate binding  positive regulation of I-kappaB kinase/NF-kappaB signaling  innate immune response  innate immune response  positive regulation of cytokine secretion  defense response to fungus  
NDEx NetworkCLEC6A
Atlas of Cancer Signalling NetworkCLEC6A
Wikipedia pathwaysCLEC6A
Orthology - Evolution
OrthoDB93978
GeneTree (enSembl)ENSG00000205846
Phylogenetic Trees/Animal Genes : TreeFamCLEC6A
HOVERGENQ6EIG7
HOGENOMQ6EIG7
Homologs : HomoloGeneCLEC6A
Homology/Alignments : Family Browser (UCSC)CLEC6A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC6A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC6A
dbVarCLEC6A
ClinVarCLEC6A
1000_GenomesCLEC6A 
Exome Variant ServerCLEC6A
ExAC (Exome Aggregation Consortium)CLEC6A (select the gene name)
Genetic variants : HAPMAP93978
Genomic Variants (DGV)CLEC6A [DGVbeta]
DECIPHER (Syndromes)12:8608591-8630926  ENSG00000205846
CONAN: Copy Number AnalysisCLEC6A 
Mutations
ICGC Data PortalCLEC6A 
TCGA Data PortalCLEC6A 
Broad Tumor PortalCLEC6A
OASIS PortalCLEC6A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC6A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC6A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC6A
DgiDB (Drug Gene Interaction Database)CLEC6A
DoCM (Curated mutations)CLEC6A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC6A (select a term)
intoGenCLEC6A
Cancer3DCLEC6A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613579   
Orphanet
MedgenCLEC6A
Genetic Testing Registry CLEC6A
NextProtQ6EIG7 [Medical]
TSGene93978
GENETestsCLEC6A
Huge Navigator CLEC6A [HugePedia]
snp3D : Map Gene to Disease93978
BioCentury BCIQCLEC6A
ClinGenCLEC6A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93978
Chemical/Pharm GKB GenePA26579
Clinical trialCLEC6A
Miscellaneous
canSAR (ICR)CLEC6A (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC6A
EVEXCLEC6A
GoPubMedCLEC6A
iHOPCLEC6A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:40 CET 2017

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