Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CLEC9A (C-type lectin domain containing 9A)

Identity

Alias_namesC-type lectin domain family 9
Alias_symbol (synonym)UNQ9341
HEEE9341
CD370
DNGR-1
Other aliasDNGR1
HGNC (Hugo) CLEC9A
LocusID (NCBI) 283420
Atlas_Id 55695
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 10030677 and ends at 10066030 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHD4 (12p13.31) / CLEC9A (12p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLEC9A   26705
Cards
Entrez_Gene (NCBI)CLEC9A  283420  C-type lectin domain containing 9A
AliasesCD370; DNGR-1; DNGR1; UNQ9341
GeneCards (Weizmann)CLEC9A
Ensembl hg19 (Hinxton)ENSG00000197992 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197992 [Gene_View]  chr12:10030677-10066030 [Contig_View]  CLEC9A [Vega]
ICGC DataPortalENSG00000197992
TCGA cBioPortalCLEC9A
AceView (NCBI)CLEC9A
Genatlas (Paris)CLEC9A
WikiGenes283420
SOURCE (Princeton)CLEC9A
Genetics Home Reference (NIH)CLEC9A
Genomic and cartography
GoldenPath hg38 (UCSC)CLEC9A  -     chr12:10030677-10066030 +  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLEC9A  -     12p13.2   [Description]    (hg19-Feb_2009)
EnsemblCLEC9A - 12p13.2 [CytoView hg19]  CLEC9A - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBICLEC9A [Mapview hg19]  CLEC9A [Mapview hg38]
OMIM612252   
Gene and transcription
Genbank (Entrez)AK307335 AY358265 DB090462 DB526089 EU339276
RefSeq transcript (Entrez)NM_207345
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLEC9A
Cluster EST : UnigeneHs.531189 [ NCBI ]
CGAP (NCI)Hs.531189
Alternative Splicing GalleryENSG00000197992
Gene ExpressionCLEC9A [ NCBI-GEO ]   CLEC9A [ EBI - ARRAY_EXPRESS ]   CLEC9A [ SEEK ]   CLEC9A [ MEM ]
Gene Expression Viewer (FireBrowse)CLEC9A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283420
GTEX Portal (Tissue expression)CLEC9A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXN8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXN8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXN8
Splice isoforms : SwissVarQ6UXN8
PhosPhoSitePlusQ6UXN8
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    C-type_lectin_CS    CTDL_fold    NKR-like_CTLD   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CLEC9A
DMDM Disease mutations283420
Blocks (Seattle)CLEC9A
PDB (SRS)3VPP   
PDB (PDBSum)3VPP   
PDB (IMB)3VPP   
PDB (RSDB)3VPP   
Structural Biology KnowledgeBase3VPP   
SCOP (Structural Classification of Proteins)3VPP   
CATH (Classification of proteins structures)3VPP   
SuperfamilyQ6UXN8
Human Protein AtlasENSG00000197992
Peptide AtlasQ6UXN8
HPRD16723
IPIIPI00176843   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXN8
IntAct (EBI)Q6UXN8
FunCoupENSG00000197992
BioGRIDCLEC9A
STRING (EMBL)CLEC9A
ZODIACCLEC9A
Ontologies - Pathways
QuickGOQ6UXN8
Ontology : AmiGOreceptor-mediated endocytosis  cell surface  integral component of membrane  carbohydrate binding  positive regulation of cytokine secretion  
Ontology : EGO-EBIreceptor-mediated endocytosis  cell surface  integral component of membrane  carbohydrate binding  positive regulation of cytokine secretion  
NDEx NetworkCLEC9A
Atlas of Cancer Signalling NetworkCLEC9A
Wikipedia pathwaysCLEC9A
Orthology - Evolution
OrthoDB283420
GeneTree (enSembl)ENSG00000197992
Phylogenetic Trees/Animal Genes : TreeFamCLEC9A
HOVERGENQ6UXN8
HOGENOMQ6UXN8
Homologs : HomoloGeneCLEC9A
Homology/Alignments : Family Browser (UCSC)CLEC9A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLEC9A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLEC9A
dbVarCLEC9A
ClinVarCLEC9A
1000_GenomesCLEC9A 
Exome Variant ServerCLEC9A
ExAC (Exome Aggregation Consortium)CLEC9A (select the gene name)
Genetic variants : HAPMAP283420
Genomic Variants (DGV)CLEC9A [DGVbeta]
DECIPHERCLEC9A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLEC9A 
Mutations
ICGC Data PortalCLEC9A 
TCGA Data PortalCLEC9A 
Broad Tumor PortalCLEC9A
OASIS PortalCLEC9A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLEC9A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLEC9A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLEC9A
DgiDB (Drug Gene Interaction Database)CLEC9A
DoCM (Curated mutations)CLEC9A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLEC9A (select a term)
intoGenCLEC9A
Cancer3DCLEC9A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612252   
Orphanet
MedgenCLEC9A
Genetic Testing Registry CLEC9A
NextProtQ6UXN8 [Medical]
TSGene283420
GENETestsCLEC9A
Target ValidationCLEC9A
Huge Navigator CLEC9A [HugePedia]
snp3D : Map Gene to Disease283420
BioCentury BCIQCLEC9A
ClinGenCLEC9A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283420
Chemical/Pharm GKB GenePA142672093
Clinical trialCLEC9A
Miscellaneous
canSAR (ICR)CLEC9A (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLEC9A
EVEXCLEC9A
GoPubMedCLEC9A
iHOPCLEC9A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:28:42 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.