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CLECL1 (C-type lectin like 1)

Identity

Alias_namesC-type lectin-like 1
Alias_symbol (synonym)DCAL1
Other aliasDCAL-1
HGNC (Hugo) CLECL1
LocusID (NCBI) 160365
Atlas_Id 52354
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 9868456 and ends at 9885895 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLECL1   24462
Cards
Entrez_Gene (NCBI)CLECL1  160365  C-type lectin like 1
AliasesDCAL-1; DCAL1
GeneCards (Weizmann)CLECL1
Ensembl hg19 (Hinxton)ENSG00000184293 [Gene_View]  chr12:9868456-9885895 [Contig_View]  CLECL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000184293 [Gene_View]  chr12:9868456-9885895 [Contig_View]  CLECL1 [Vega]
ICGC DataPortalENSG00000184293
TCGA cBioPortalCLECL1
AceView (NCBI)CLECL1
Genatlas (Paris)CLECL1
WikiGenes160365
SOURCE (Princeton)CLECL1
Genetics Home Reference (NIH)CLECL1
Genomic and cartography
GoldenPath hg19 (UCSC)CLECL1  -     chr12:9868456-9885895 -  12p13.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLECL1  -     12p13.31   [Description]    (hg38-Dec_2013)
EnsemblCLECL1 - 12p13.31 [CytoView hg19]  CLECL1 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBICLECL1 [Mapview hg19]  CLECL1 [Mapview hg38]
OMIM607467   
Gene and transcription
Genbank (Entrez)AF518873 AW237307 BC042176 BC093857 BC093859
RefSeq transcript (Entrez)NM_001253750 NM_001267701 NM_172004
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009714 NW_004929383
Consensus coding sequences : CCDS (NCBI)CLECL1
Cluster EST : UnigeneHs.734740 [ NCBI ]
CGAP (NCI)Hs.734740
Alternative Splicing GalleryENSG00000184293
Gene ExpressionCLECL1 [ NCBI-GEO ]   CLECL1 [ EBI - ARRAY_EXPRESS ]   CLECL1 [ SEEK ]   CLECL1 [ MEM ]
Gene Expression Viewer (FireBrowse)CLECL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)160365
GTEX Portal (Tissue expression)CLECL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZS7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZS7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZS7
Splice isoforms : SwissVarQ8IZS7
PhosPhoSitePlusQ8IZS7
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CLECL1
DMDM Disease mutations160365
Blocks (Seattle)CLECL1
SuperfamilyQ8IZS7
Human Protein AtlasENSG00000184293
Peptide AtlasQ8IZS7
HPRD16247
IPIIPI00218064   IPI01015821   IPI01015449   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZS7
IntAct (EBI)Q8IZS7
FunCoupENSG00000184293
BioGRIDCLECL1
STRING (EMBL)CLECL1
ZODIACCLECL1
Ontologies - Pathways
QuickGOQ8IZS7
Ontology : AmiGOplasma membrane  integral component of membrane  carbohydrate binding  
Ontology : EGO-EBIplasma membrane  integral component of membrane  carbohydrate binding  
NDEx NetworkCLECL1
Atlas of Cancer Signalling NetworkCLECL1
Wikipedia pathwaysCLECL1
Orthology - Evolution
OrthoDB160365
GeneTree (enSembl)ENSG00000184293
Phylogenetic Trees/Animal Genes : TreeFamCLECL1
HOVERGENQ8IZS7
HOGENOMQ8IZS7
Homologs : HomoloGeneCLECL1
Homology/Alignments : Family Browser (UCSC)CLECL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLECL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLECL1
dbVarCLECL1
ClinVarCLECL1
1000_GenomesCLECL1 
Exome Variant ServerCLECL1
ExAC (Exome Aggregation Consortium)CLECL1 (select the gene name)
Genetic variants : HAPMAP160365
Genomic Variants (DGV)CLECL1 [DGVbeta]
DECIPHER (Syndromes)12:9868456-9885895  ENSG00000184293
CONAN: Copy Number AnalysisCLECL1 
Mutations
ICGC Data PortalCLECL1 
TCGA Data PortalCLECL1 
Broad Tumor PortalCLECL1
OASIS PortalCLECL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLECL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLECL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLECL1
DgiDB (Drug Gene Interaction Database)CLECL1
DoCM (Curated mutations)CLECL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLECL1 (select a term)
intoGenCLECL1
Cancer3DCLECL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607467   
Orphanet
MedgenCLECL1
Genetic Testing Registry CLECL1
NextProtQ8IZS7 [Medical]
TSGene160365
GENETestsCLECL1
Huge Navigator CLECL1 [HugePedia]
snp3D : Map Gene to Disease160365
BioCentury BCIQCLECL1
ClinGenCLECL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD160365
Chemical/Pharm GKB GenePA162382341
Clinical trialCLECL1
Miscellaneous
canSAR (ICR)CLECL1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLECL1
EVEXCLECL1
GoPubMedCLECL1
iHOPCLECL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:56:50 CEST 2017

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