Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CLHC1 (clathrin heavy chain linker domain containing 1)

Identity

Alias_namesC2orf63
chromosome 2 open reading frame 63
Alias_symbol (synonym)FLJ31438
Other alias
HGNC (Hugo) CLHC1
LocusID (NCBI) 130162
Atlas_Id 61883
Location 2p16.1  [Link to chromosome band 2p16]
Location_base_pair Starts at 55172551 and ends at 55232563 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLHC1   26453
Cards
Entrez_Gene (NCBI)CLHC1  130162  clathrin heavy chain linker domain containing 1
AliasesC2orf63
GeneCards (Weizmann)CLHC1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:55172551-55232563 [Contig_View]  CLHC1 [Vega]
TCGA cBioPortalCLHC1
AceView (NCBI)CLHC1
Genatlas (Paris)CLHC1
WikiGenes130162
SOURCE (Princeton)CLHC1
Genetics Home Reference (NIH)CLHC1
Genomic and cartography
GoldenPath hg38 (UCSC)CLHC1  -     chr2:55172551-55232563 -  2p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLHC1  -     2p16.1   [Description]    (hg19-Feb_2009)
EnsemblCLHC1 - 2p16.1 [CytoView hg19]  CLHC1 - 2p16.1 [CytoView hg38]
Mapping of homologs : NCBICLHC1 [Mapview hg19]  CLHC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056000 AK315683 BC029502 BC036908 BM046729
RefSeq transcript (Entrez)NM_001135598 NM_152385
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLHC1
Cluster EST : UnigeneHs.347014 [ NCBI ]
CGAP (NCI)Hs.347014
Gene ExpressionCLHC1 [ NCBI-GEO ]   CLHC1 [ EBI - ARRAY_EXPRESS ]   CLHC1 [ SEEK ]   CLHC1 [ MEM ]
Gene Expression Viewer (FireBrowse)CLHC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130162
GTEX Portal (Tissue expression)CLHC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHS4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHS4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHS4
Splice isoforms : SwissVarQ8NHS4
PhosPhoSitePlusQ8NHS4
Domains : Interpro (EBI)ARM-type_fold    Clathrin_H-chain_linker    Clathrin_heavy-chain-rel    TSNAXIP1_N   
Domain families : Pfam (Sanger)TSNAXIP1_N (PF15739)   
Domain families : Pfam (NCBI)pfam15739   
Conserved Domain (NCBI)CLHC1
DMDM Disease mutations130162
Blocks (Seattle)CLHC1
SuperfamilyQ8NHS4
Peptide AtlasQ8NHS4
HPRD08100
IPIIPI00783112   IPI00887948   IPI01012910   IPI00894123   IPI00894290   IPI00893912   IPI00894022   IPI00894277   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHS4
IntAct (EBI)Q8NHS4
BioGRIDCLHC1
STRING (EMBL)CLHC1
ZODIACCLHC1
Ontologies - Pathways
QuickGOQ8NHS4
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCLHC1
Atlas of Cancer Signalling NetworkCLHC1
Wikipedia pathwaysCLHC1
Orthology - Evolution
OrthoDB130162
Phylogenetic Trees/Animal Genes : TreeFamCLHC1
HOVERGENQ8NHS4
HOGENOMQ8NHS4
Homologs : HomoloGeneCLHC1
Homology/Alignments : Family Browser (UCSC)CLHC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLHC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLHC1
dbVarCLHC1
ClinVarCLHC1
1000_GenomesCLHC1 
Exome Variant ServerCLHC1
ExAC (Exome Aggregation Consortium)CLHC1 (select the gene name)
Genetic variants : HAPMAP130162
Genomic Variants (DGV)CLHC1 [DGVbeta]
DECIPHERCLHC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLHC1 
Mutations
ICGC Data PortalCLHC1 
TCGA Data PortalCLHC1 
Broad Tumor PortalCLHC1
OASIS PortalCLHC1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCLHC1
BioMutasearch CLHC1
DgiDB (Drug Gene Interaction Database)CLHC1
DoCM (Curated mutations)CLHC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLHC1 (select a term)
intoGenCLHC1
Cancer3DCLHC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLHC1
Genetic Testing Registry CLHC1
NextProtQ8NHS4 [Medical]
TSGene130162
GENETestsCLHC1
Target ValidationCLHC1
Huge Navigator CLHC1 [HugePedia]
snp3D : Map Gene to Disease130162
BioCentury BCIQCLHC1
ClinGenCLHC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130162
Chemical/Pharm GKB GenePA162379359
Clinical trialCLHC1
Miscellaneous
canSAR (ICR)CLHC1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLHC1
EVEXCLHC1
GoPubMedCLHC1
iHOPCLHC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:43:53 CEST 2017

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