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CLIP2 (CAP-Gly domain containing linker protein 2)

Identity

Alias_namesWBSCR4
CYLN2
WBSCR3
cytoplasmic linker 2
Williams-Beuren syndrome chromosome region 3
CAP-GLY domain containing linker protein 2
Alias_symbol (synonym)CLIP-115
KIAA0291
WSCR4
CLIP
WSCR3
Other alias
HGNC (Hugo) CLIP2
LocusID (NCBI) 7461
Atlas_Id 54218
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 73703805 and ends at 73820273 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CLIP2 (7q11.23) / KRT8 (12q13.13)CLIP2 (7q11.23) / PYGB (20p11.21)CLIP2 (7q11.23) / RFC2 (7q11.23)
ELL (19p13.11) / CLIP2 (7q11.23)ENG (9q34.11) / CLIP2 (7q11.23)FOXK2 (17q25.3) / CLIP2 (7q11.23)
GTF2I (7q11.23) / CLIP2 (7q11.23)KMT2C (7q36.1) / CLIP2 (7q11.23)MAPK1 (22q11.21) / CLIP2 (7q11.23)
SCGB3A1 (5q35.3) / CLIP2 (7q11.23)MLL3 CLIP2 7q11.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLIP2   2586
Cards
Entrez_Gene (NCBI)CLIP2  7461  CAP-Gly domain containing linker protein 2
AliasesCLIP; CLIP-115; CYLN2; WBSCR3; 
WBSCR4; WSCR3; WSCR4
GeneCards (Weizmann)CLIP2
Ensembl hg19 (Hinxton)ENSG00000106665 [Gene_View]  chr7:73703805-73820273 [Contig_View]  CLIP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000106665 [Gene_View]  chr7:73703805-73820273 [Contig_View]  CLIP2 [Vega]
ICGC DataPortalENSG00000106665
TCGA cBioPortalCLIP2
AceView (NCBI)CLIP2
Genatlas (Paris)CLIP2
WikiGenes7461
SOURCE (Princeton)CLIP2
Genetics Home Reference (NIH)CLIP2
Genomic and cartography
GoldenPath hg19 (UCSC)CLIP2  -     chr7:73703805-73820273 +  7q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLIP2  -     7q11.23   [Description]    (hg38-Dec_2013)
EnsemblCLIP2 - 7q11.23 [CytoView hg19]  CLIP2 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBICLIP2 [Mapview hg19]  CLIP2 [Mapview hg38]
OMIM603432   
Gene and transcription
Genbank (Entrez)AB006629 AI204077 AL157546 AY295764 AY927468
RefSeq transcript (Entrez)NM_003388 NM_032421
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_011830 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)CLIP2
Cluster EST : UnigeneHs.647018 [ NCBI ]
CGAP (NCI)Hs.647018
Alternative Splicing GalleryENSG00000106665
Gene ExpressionCLIP2 [ NCBI-GEO ]   CLIP2 [ EBI - ARRAY_EXPRESS ]   CLIP2 [ SEEK ]   CLIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)CLIP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7461
GTEX Portal (Tissue expression)CLIP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UDT6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UDT6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UDT6
Splice isoforms : SwissVarQ9UDT6
PhosPhoSitePlusQ9UDT6
Domaine pattern : Prosite (Expaxy)CAP_GLY_1 (PS00845)    CAP_GLY_2 (PS50245)   
Domains : Interpro (EBI)CAP-Gly_domain    CLIP2   
Domain families : Pfam (Sanger)CAP_GLY (PF01302)   
Domain families : Pfam (NCBI)pfam01302   
Domain families : Smart (EMBL)CAP_GLY (SM01052)  
Conserved Domain (NCBI)CLIP2
DMDM Disease mutations7461
Blocks (Seattle)CLIP2
PDB (SRS)2CP2    2CP3   
PDB (PDBSum)2CP2    2CP3   
PDB (IMB)2CP2    2CP3   
PDB (RSDB)2CP2    2CP3   
Structural Biology KnowledgeBase2CP2    2CP3   
SCOP (Structural Classification of Proteins)2CP2    2CP3   
CATH (Classification of proteins structures)2CP2    2CP3   
SuperfamilyQ9UDT6
Human Protein AtlasENSG00000106665
Peptide AtlasQ9UDT6
HPRD09140
IPIIPI00019642   IPI00246616   IPI01010376   IPI01009924   IPI00946603   IPI00946773   
Protein Interaction databases
DIP (DOE-UCLA)Q9UDT6
IntAct (EBI)Q9UDT6
FunCoupENSG00000106665
BioGRIDCLIP2
STRING (EMBL)CLIP2
ZODIACCLIP2
Ontologies - Pathways
QuickGOQ9UDT6
Ontology : AmiGOmicrotubule associated complex  cytoplasmic microtubule  microtubule plus-end  lamellar body  microtubule plus-end binding  dendritic microtubule  
Ontology : EGO-EBImicrotubule associated complex  cytoplasmic microtubule  microtubule plus-end  lamellar body  microtubule plus-end binding  dendritic microtubule  
NDEx NetworkCLIP2
Atlas of Cancer Signalling NetworkCLIP2
Wikipedia pathwaysCLIP2
Orthology - Evolution
OrthoDB7461
GeneTree (enSembl)ENSG00000106665
Phylogenetic Trees/Animal Genes : TreeFamCLIP2
HOVERGENQ9UDT6
HOGENOMQ9UDT6
Homologs : HomoloGeneCLIP2
Homology/Alignments : Family Browser (UCSC)CLIP2
Gene fusions - Rearrangements
Fusion : MitelmanELL/CLIP2 [19p13.11/7q11.23]  [t(7;19)(q11;p13)]  
Fusion : MitelmanGTF2I/CLIP2 [7q11.23/7q11.23]  [t(7;7)(q11;q11)]  
Fusion : MitelmanKMT2C/CLIP2 [7q36.1/7q11.23]  [t(7;7)(q11;q36)]  
Fusion: TCGAMLL3 CLIP2 7q11.23 BRCA
Fusion Cancer (Beijing)SCGB3A1 [5q35.3]  -  CLIP2 [7q11.23]  [FUSC002592]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLIP2
dbVarCLIP2
ClinVarCLIP2
1000_GenomesCLIP2 
Exome Variant ServerCLIP2
ExAC (Exome Aggregation Consortium)CLIP2 (select the gene name)
Genetic variants : HAPMAP7461
Genomic Variants (DGV)CLIP2 [DGVbeta]
DECIPHER (Syndromes)7:73703805-73820273  ENSG00000106665
CONAN: Copy Number AnalysisCLIP2 
Mutations
ICGC Data PortalCLIP2 
TCGA Data PortalCLIP2 
Broad Tumor PortalCLIP2
OASIS PortalCLIP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLIP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLIP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLIP2
DgiDB (Drug Gene Interaction Database)CLIP2
DoCM (Curated mutations)CLIP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLIP2 (select a term)
intoGenCLIP2
Cancer3DCLIP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603432   
Orphanet145   
MedgenCLIP2
Genetic Testing Registry CLIP2
NextProtQ9UDT6 [Medical]
TSGene7461
GENETestsCLIP2
Huge Navigator CLIP2 [HugePedia]
snp3D : Map Gene to Disease7461
BioCentury BCIQCLIP2
ClinGenCLIP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7461
Chemical/Pharm GKB GenePA27085
Clinical trialCLIP2
Miscellaneous
canSAR (ICR)CLIP2 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLIP2
EVEXCLIP2
GoPubMedCLIP2
iHOPCLIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:00:50 CET 2017

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