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CLIP3 (CAP-Gly domain containing linker protein 3)

Identity

Alias_namesCAP-GLY domain containing linker protein 3
Alias_symbol (synonym)CLIPR-59
RSNL1
Other aliasCLIPR59
HGNC (Hugo) CLIP3
LocusID (NCBI) 25999
Atlas_Id 55458
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36505562 and ends at 36523573 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLIP3   24314
Cards
Entrez_Gene (NCBI)CLIP3  25999  CAP-Gly domain containing linker protein 3
AliasesCLIPR-59; CLIPR59; RSNL1
GeneCards (Weizmann)CLIP3
Ensembl hg19 (Hinxton)ENSG00000105270 [Gene_View]  chr19:36505562-36523573 [Contig_View]  CLIP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000105270 [Gene_View]  chr19:36505562-36523573 [Contig_View]  CLIP3 [Vega]
ICGC DataPortalENSG00000105270
TCGA cBioPortalCLIP3
AceView (NCBI)CLIP3
Genatlas (Paris)CLIP3
WikiGenes25999
SOURCE (Princeton)CLIP3
Genetics Home Reference (NIH)CLIP3
Genomic and cartography
GoldenPath hg19 (UCSC)CLIP3  -     chr19:36505562-36523573 -  19q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLIP3  -     19q13.12   [Description]    (hg38-Dec_2013)
EnsemblCLIP3 - 19q13.12 [CytoView hg19]  CLIP3 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBICLIP3 [Mapview hg19]  CLIP3 [Mapview hg38]
OMIM607382   
Gene and transcription
Genbank (Entrez)AJ427922 AK056445 AK090732 AK092354 AK094738
RefSeq transcript (Entrez)NM_001199570 NM_015526
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)CLIP3
Cluster EST : UnigeneHs.466539 [ NCBI ]
CGAP (NCI)Hs.466539
Alternative Splicing GalleryENSG00000105270
Gene ExpressionCLIP3 [ NCBI-GEO ]   CLIP3 [ EBI - ARRAY_EXPRESS ]   CLIP3 [ SEEK ]   CLIP3 [ MEM ]
Gene Expression Viewer (FireBrowse)CLIP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25999
GTEX Portal (Tissue expression)CLIP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DZ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DZ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DZ5
Splice isoforms : SwissVarQ96DZ5
PhosPhoSitePlusQ96DZ5
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    CAP_GLY_1 (PS00845)    CAP_GLY_2 (PS50245)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    CAP-Gly_domain    CLIP3   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    CAP_GLY (PF01302)   
Domain families : Pfam (NCBI)pfam12796    pfam01302   
Domain families : Smart (EMBL)ANK (SM00248)  CAP_GLY (SM01052)  
Conserved Domain (NCBI)CLIP3
DMDM Disease mutations25999
Blocks (Seattle)CLIP3
PDB (SRS)2CP0   
PDB (PDBSum)2CP0   
PDB (IMB)2CP0   
PDB (RSDB)2CP0   
Structural Biology KnowledgeBase2CP0   
SCOP (Structural Classification of Proteins)2CP0   
CATH (Classification of proteins structures)2CP0   
SuperfamilyQ96DZ5
Human Protein AtlasENSG00000105270
Peptide AtlasQ96DZ5
HPRD09572
IPIIPI00103362   IPI01025268   IPI01015690   
Protein Interaction databases
DIP (DOE-UCLA)Q96DZ5
IntAct (EBI)Q96DZ5
FunCoupENSG00000105270
BioGRIDCLIP3
STRING (EMBL)CLIP3
ZODIACCLIP3
Ontologies - Pathways
QuickGOQ96DZ5
Ontology : AmiGOpositive regulation of protein phosphorylation  Golgi stack  trans-Golgi network  cytosol  plasma membrane  plasma membrane  microtubule binding  microtubule binding  regulation of tumor necrosis factor-mediated signaling pathway  positive regulation of glucose transport  peptidyl-L-cysteine S-palmitoylation  negative regulation of microtubule polymerization  early endosome membrane  trans-Golgi network membrane  trans-Golgi network membrane  ganglioside binding  positive regulation of apoptotic process  membrane biogenesis  membrane raft  fat cell differentiation  positive regulation of endocytosis  recycling endosome membrane  chaperone-mediated protein transport  positive regulation of establishment of protein localization to plasma membrane  
Ontology : EGO-EBIpositive regulation of protein phosphorylation  Golgi stack  trans-Golgi network  cytosol  plasma membrane  plasma membrane  microtubule binding  microtubule binding  regulation of tumor necrosis factor-mediated signaling pathway  positive regulation of glucose transport  peptidyl-L-cysteine S-palmitoylation  negative regulation of microtubule polymerization  early endosome membrane  trans-Golgi network membrane  trans-Golgi network membrane  ganglioside binding  positive regulation of apoptotic process  membrane biogenesis  membrane raft  fat cell differentiation  positive regulation of endocytosis  recycling endosome membrane  chaperone-mediated protein transport  positive regulation of establishment of protein localization to plasma membrane  
NDEx NetworkCLIP3
Atlas of Cancer Signalling NetworkCLIP3
Wikipedia pathwaysCLIP3
Orthology - Evolution
OrthoDB25999
GeneTree (enSembl)ENSG00000105270
Phylogenetic Trees/Animal Genes : TreeFamCLIP3
HOVERGENQ96DZ5
HOGENOMQ96DZ5
Homologs : HomoloGeneCLIP3
Homology/Alignments : Family Browser (UCSC)CLIP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLIP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLIP3
dbVarCLIP3
ClinVarCLIP3
1000_GenomesCLIP3 
Exome Variant ServerCLIP3
ExAC (Exome Aggregation Consortium)CLIP3 (select the gene name)
Genetic variants : HAPMAP25999
Genomic Variants (DGV)CLIP3 [DGVbeta]
DECIPHER (Syndromes)19:36505562-36523573  ENSG00000105270
CONAN: Copy Number AnalysisCLIP3 
Mutations
ICGC Data PortalCLIP3 
TCGA Data PortalCLIP3 
Broad Tumor PortalCLIP3
OASIS PortalCLIP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLIP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLIP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLIP3
DgiDB (Drug Gene Interaction Database)CLIP3
DoCM (Curated mutations)CLIP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLIP3 (select a term)
intoGenCLIP3
Cancer3DCLIP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607382   
Orphanet
MedgenCLIP3
Genetic Testing Registry CLIP3
NextProtQ96DZ5 [Medical]
TSGene25999
GENETestsCLIP3
Huge Navigator CLIP3 [HugePedia]
snp3D : Map Gene to Disease25999
BioCentury BCIQCLIP3
ClinGenCLIP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25999
Chemical/Pharm GKB GenePA162382439
Clinical trialCLIP3
Miscellaneous
canSAR (ICR)CLIP3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLIP3
EVEXCLIP3
GoPubMedCLIP3
iHOPCLIP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:56:51 CEST 2017

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