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CLIP4 (CAP-GLY domain containing linker protein family, member 4)

Identity

Alias_namesRSNL2
restin-like 2
CAP-GLY domain containing linker protein family, member 4
Alias_symbol (synonym)FLJ21069
Other alias
HGNC (Hugo) CLIP4
LocusID (NCBI) 79745
Atlas_Id 61891
Location 2p23.2  [Link to chromosome band 2p23]
Location_base_pair Starts at 29338292 and ends at 29406679 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANP32B (9q22.33) / CLIP4 (2p23.2)CLIP4 (2p23.2) / BRE (2p23.2)CLIP4 (2p23.2) / EPHB4 (7q22.1)
CLIP4 (2p23.2) / FAM179A (2p23.2)CLIP4 (2p23.2) / IPO4 (14q12)CLIP4 (2p23.2) / SETD5 (3p25.3)
GPR107 (9q34.11) / CLIP4 (2p23.2)CLIP4 FAM179ACLIP4 BRE

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLIP4   26108
Cards
Entrez_Gene (NCBI)CLIP4  79745  CAP-GLY domain containing linker protein family, member 4
AliasesRSNL2
GeneCards (Weizmann)CLIP4
Ensembl hg19 (Hinxton)ENSG00000115295 [Gene_View]  chr2:29338292-29406679 [Contig_View]  CLIP4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000115295 [Gene_View]  chr2:29338292-29406679 [Contig_View]  CLIP4 [Vega]
ICGC DataPortalENSG00000115295
TCGA cBioPortalCLIP4
AceView (NCBI)CLIP4
Genatlas (Paris)CLIP4
WikiGenes79745
SOURCE (Princeton)CLIP4
Genetics Home Reference (NIH)CLIP4
Genomic and cartography
GoldenPath hg19 (UCSC)CLIP4  -     chr2:29338292-29406679 +  2p23.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLIP4  -     2p23.2   [Description]    (hg38-Dec_2013)
EnsemblCLIP4 - 2p23.2 [CytoView hg19]  CLIP4 - 2p23.2 [CytoView hg38]
Mapping of homologs : NCBICLIP4 [Mapview hg19]  CLIP4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA429893 AB209042 AF433661 AI433385 AK023505
RefSeq transcript (Entrez)NM_001287527 NM_001287528 NM_024692
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)CLIP4
Cluster EST : UnigeneHs.122927 [ NCBI ]
CGAP (NCI)Hs.122927
Alternative Splicing GalleryENSG00000115295
Gene ExpressionCLIP4 [ NCBI-GEO ]   CLIP4 [ EBI - ARRAY_EXPRESS ]   CLIP4 [ SEEK ]   CLIP4 [ MEM ]
Gene Expression Viewer (FireBrowse)CLIP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79745
GTEX Portal (Tissue expression)CLIP4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N3C7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N3C7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N3C7
Splice isoforms : SwissVarQ8N3C7
PhosPhoSitePlusQ8N3C7
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    CAP_GLY_1 (PS00845)    CAP_GLY_2 (PS50245)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    CAP-Gly_domain    CLIP4   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    CAP_GLY (PF01302)   
Domain families : Pfam (NCBI)pfam12796    pfam01302   
Domain families : Smart (EMBL)ANK (SM00248)  CAP_GLY (SM01052)  
Conserved Domain (NCBI)CLIP4
DMDM Disease mutations79745
Blocks (Seattle)CLIP4
PDB (SRS)2Z0W   
PDB (PDBSum)2Z0W   
PDB (IMB)2Z0W   
PDB (RSDB)2Z0W   
Structural Biology KnowledgeBase2Z0W   
SCOP (Structural Classification of Proteins)2Z0W   
CATH (Classification of proteins structures)2Z0W   
SuperfamilyQ8N3C7
Human Protein AtlasENSG00000115295
Peptide AtlasQ8N3C7
HPRD08634
IPIIPI00328584   IPI00552288   IPI00387123   IPI00552583   IPI00922271   IPI00894085   IPI00894231   IPI00892891   IPI00892672   
Protein Interaction databases
DIP (DOE-UCLA)Q8N3C7
IntAct (EBI)Q8N3C7
FunCoupENSG00000115295
BioGRIDCLIP4
STRING (EMBL)CLIP4
ZODIACCLIP4
Ontologies - Pathways
QuickGOQ8N3C7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCLIP4
Atlas of Cancer Signalling NetworkCLIP4
Wikipedia pathwaysCLIP4
Orthology - Evolution
OrthoDB79745
GeneTree (enSembl)ENSG00000115295
Phylogenetic Trees/Animal Genes : TreeFamCLIP4
HOVERGENQ8N3C7
HOGENOMQ8N3C7
Homologs : HomoloGeneCLIP4
Homology/Alignments : Family Browser (UCSC)CLIP4
Gene fusions - Rearrangements
Fusion: TCGACLIP4 FAM179A
Fusion: TCGACLIP4 BRE
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLIP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLIP4
dbVarCLIP4
ClinVarCLIP4
1000_GenomesCLIP4 
Exome Variant ServerCLIP4
ExAC (Exome Aggregation Consortium)CLIP4 (select the gene name)
Genetic variants : HAPMAP79745
Genomic Variants (DGV)CLIP4 [DGVbeta]
DECIPHER (Syndromes)2:29338292-29406679  ENSG00000115295
CONAN: Copy Number AnalysisCLIP4 
Mutations
ICGC Data PortalCLIP4 
TCGA Data PortalCLIP4 
Broad Tumor PortalCLIP4
OASIS PortalCLIP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLIP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLIP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLIP4
DgiDB (Drug Gene Interaction Database)CLIP4
DoCM (Curated mutations)CLIP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLIP4 (select a term)
intoGenCLIP4
Cancer3DCLIP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLIP4
Genetic Testing Registry CLIP4
NextProtQ8N3C7 [Medical]
TSGene79745
GENETestsCLIP4
Huge Navigator CLIP4 [HugePedia]
snp3D : Map Gene to Disease79745
BioCentury BCIQCLIP4
ClinGenCLIP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79745
Chemical/Pharm GKB GenePA162382440
Clinical trialCLIP4
Miscellaneous
canSAR (ICR)CLIP4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLIP4
EVEXCLIP4
GoPubMedCLIP4
iHOPCLIP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:41 CET 2017

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