Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CLLU1 (chronic lymphocytic leukemia up-regulated 1)

Identity

Other alias-
HGNC (Hugo) CLLU1
LocusID (NCBI) 574028
Atlas_Id 43023
Location 12q22  [Link to chromosome band 12q22]
Location_base_pair Starts at 92817735 and ends at 92824778 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLLU1   29841
Cards
Entrez_Gene (NCBI)CLLU1  574028  chronic lymphocytic leukemia up-regulated 1
Aliases
GeneCards (Weizmann)CLLU1
Ensembl hg19 (Hinxton)ENSG00000257127 [Gene_View]  chr12:92817735-92824778 [Contig_View]  CLLU1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000257127 [Gene_View]  chr12:92817735-92824778 [Contig_View]  CLLU1 [Vega]
ICGC DataPortalENSG00000257127
TCGA cBioPortalCLLU1
AceView (NCBI)CLLU1
Genatlas (Paris)CLLU1
WikiGenes574028
SOURCE (Princeton)CLLU1
Genetics Home Reference (NIH)CLLU1
Genomic and cartography
GoldenPath hg19 (UCSC)CLLU1  -     chr12:92817735-92824778 +  12q22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLLU1  -     12q22   [Description]    (hg38-Dec_2013)
EnsemblCLLU1 - 12q22 [CytoView hg19]  CLLU1 - 12q22 [CytoView hg38]
Mapping of homologs : NCBICLLU1 [Mapview hg19]  CLLU1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ845162 AJ845163 AJ845164 AJ845165 AJ845166
RefSeq transcript (Entrez)NM_001025233
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)CLLU1
Cluster EST : UnigeneHs.730377 [ NCBI ]
CGAP (NCI)Hs.730377
Alternative Splicing GalleryENSG00000257127
Gene ExpressionCLLU1 [ NCBI-GEO ]   CLLU1 [ EBI - ARRAY_EXPRESS ]   CLLU1 [ SEEK ]   CLLU1 [ MEM ]
Gene Expression Viewer (FireBrowse)CLLU1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)574028
GTEX Portal (Tissue expression)CLLU1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5K131   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5K131  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5K131
Splice isoforms : SwissVarQ5K131
PhosPhoSitePlusQ5K131
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CLLU1
DMDM Disease mutations574028
Blocks (Seattle)CLLU1
SuperfamilyQ5K131
Human Protein AtlasENSG00000257127
Peptide AtlasQ5K131
IPIIPI00552973   
Protein Interaction databases
DIP (DOE-UCLA)Q5K131
IntAct (EBI)Q5K131
FunCoupENSG00000257127
BioGRIDCLLU1
STRING (EMBL)CLLU1
ZODIACCLLU1
Ontologies - Pathways
QuickGOQ5K131
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkCLLU1
Atlas of Cancer Signalling NetworkCLLU1
Wikipedia pathwaysCLLU1
Orthology - Evolution
OrthoDB574028
GeneTree (enSembl)ENSG00000257127
Phylogenetic Trees/Animal Genes : TreeFamCLLU1
HOVERGENQ5K131
HOGENOMQ5K131
Homologs : HomoloGeneCLLU1
Homology/Alignments : Family Browser (UCSC)CLLU1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLLU1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLLU1
dbVarCLLU1
ClinVarCLLU1
1000_GenomesCLLU1 
Exome Variant ServerCLLU1
ExAC (Exome Aggregation Consortium)CLLU1 (select the gene name)
Genetic variants : HAPMAP574028
Genomic Variants (DGV)CLLU1 [DGVbeta]
DECIPHER (Syndromes)12:92817735-92824778  ENSG00000257127
CONAN: Copy Number AnalysisCLLU1 
Mutations
ICGC Data PortalCLLU1 
TCGA Data PortalCLLU1 
Broad Tumor PortalCLLU1
OASIS PortalCLLU1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLLU1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLLU1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLLU1
DgiDB (Drug Gene Interaction Database)CLLU1
DoCM (Curated mutations)CLLU1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLLU1 (select a term)
intoGenCLLU1
Cancer3DCLLU1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLLU1
Genetic Testing Registry CLLU1
NextProtQ5K131 [Medical]
TSGene574028
GENETestsCLLU1
Huge Navigator CLLU1 [HugePedia]
snp3D : Map Gene to Disease574028
BioCentury BCIQCLLU1
ClinGenCLLU1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD574028
Chemical/Pharm GKB GenePA142672095
Clinical trialCLLU1
Miscellaneous
canSAR (ICR)CLLU1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLLU1
EVEXCLLU1
GoPubMedCLLU1
iHOPCLLU1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:00:52 CET 2017

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