Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CLLU1OS (chronic lymphocytic leukemia up-regulated 1 opposite strand)

Identity

Alias_nameschronic lymphocytic leukemia up-regulated 1 overlapping strand
Other alias-
HGNC (Hugo) CLLU1OS
LocusID (NCBI) 574016
Atlas_Id 43024
Location 12q22  [Link to chromosome band 12q22]
Location_base_pair Starts at 92420094 and ends at 92428148 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLLU1OS   24070
Cards
Entrez_Gene (NCBI)CLLU1OS  574016  chronic lymphocytic leukemia up-regulated 1 opposite strand
Aliases
GeneCards (Weizmann)CLLU1OS
Ensembl hg19 (Hinxton)ENSG00000205057 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205057 [Gene_View]  chr12:92420094-92428148 [Contig_View]  CLLU1OS [Vega]
ICGC DataPortalENSG00000205057
TCGA cBioPortalCLLU1OS
AceView (NCBI)CLLU1OS
Genatlas (Paris)CLLU1OS
WikiGenes574016
SOURCE (Princeton)CLLU1OS
Genetics Home Reference (NIH)CLLU1OS
Genomic and cartography
GoldenPath hg38 (UCSC)CLLU1OS  -     chr12:92420094-92428148 -  12q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLLU1OS  -     12q22   [Description]    (hg19-Feb_2009)
EnsemblCLLU1OS - 12q22 [CytoView hg19]  CLLU1OS - 12q22 [CytoView hg38]
Mapping of homologs : NCBICLLU1OS [Mapview hg19]  CLLU1OS [Mapview hg38]
OMIM616989   
Gene and transcription
Genbank (Entrez)AJ845168 BC148493 BC153086
RefSeq transcript (Entrez)NM_001025232
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLLU1OS
Cluster EST : UnigeneHs.551199 [ NCBI ]
CGAP (NCI)Hs.551199
Alternative Splicing GalleryENSG00000205057
Gene ExpressionCLLU1OS [ NCBI-GEO ]   CLLU1OS [ EBI - ARRAY_EXPRESS ]   CLLU1OS [ SEEK ]   CLLU1OS [ MEM ]
Gene Expression Viewer (FireBrowse)CLLU1OS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)574016
GTEX Portal (Tissue expression)CLLU1OS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5K130   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5K130  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5K130
Splice isoforms : SwissVarQ5K130
PhosPhoSitePlusQ5K130
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CLLU1OS
DMDM Disease mutations574016
Blocks (Seattle)CLLU1OS
SuperfamilyQ5K130
Human Protein AtlasENSG00000205057
Peptide AtlasQ5K130
IPIIPI00552473   
Protein Interaction databases
DIP (DOE-UCLA)Q5K130
IntAct (EBI)Q5K130
FunCoupENSG00000205057
BioGRIDCLLU1OS
STRING (EMBL)CLLU1OS
ZODIACCLLU1OS
Ontologies - Pathways
QuickGOQ5K130
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCLLU1OS
Atlas of Cancer Signalling NetworkCLLU1OS
Wikipedia pathwaysCLLU1OS
Orthology - Evolution
OrthoDB574016
GeneTree (enSembl)ENSG00000205057
Phylogenetic Trees/Animal Genes : TreeFamCLLU1OS
HOVERGENQ5K130
HOGENOMQ5K130
Homologs : HomoloGeneCLLU1OS
Homology/Alignments : Family Browser (UCSC)CLLU1OS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLLU1OS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLLU1OS
dbVarCLLU1OS
ClinVarCLLU1OS
1000_GenomesCLLU1OS 
Exome Variant ServerCLLU1OS
ExAC (Exome Aggregation Consortium)CLLU1OS (select the gene name)
Genetic variants : HAPMAP574016
Genomic Variants (DGV)CLLU1OS [DGVbeta]
DECIPHERCLLU1OS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLLU1OS 
Mutations
ICGC Data PortalCLLU1OS 
TCGA Data PortalCLLU1OS 
Broad Tumor PortalCLLU1OS
OASIS PortalCLLU1OS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLLU1OS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLLU1OS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLLU1OS
DgiDB (Drug Gene Interaction Database)CLLU1OS
DoCM (Curated mutations)CLLU1OS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLLU1OS (select a term)
intoGenCLLU1OS
Cancer3DCLLU1OS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616989   
Orphanet
MedgenCLLU1OS
Genetic Testing Registry CLLU1OS
NextProtQ5K130 [Medical]
TSGene574016
GENETestsCLLU1OS
Target ValidationCLLU1OS
Huge Navigator CLLU1OS [HugePedia]
snp3D : Map Gene to Disease574016
BioCentury BCIQCLLU1OS
ClinGenCLLU1OS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD574016
Chemical/Pharm GKB GenePA142672096
Clinical trialCLLU1OS
Miscellaneous
canSAR (ICR)CLLU1OS (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLLU1OS
EVEXCLLU1OS
GoPubMedCLLU1OS
iHOPCLLU1OS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:28:45 CEST 2017

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