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CLMAT3 (colorectal liver metastasis associated transcript 3)

Identity

Other aliasCTB-113P19.1
SPARC-AS1
HGNC (Hugo) CLMAT3
LocusID (NCBI) 101927096
Atlas_Id 56985
Location 5q33.1  [Link to chromosome band 5q33]
Location_base_pair Starts at 151676945 and ends at 151687907 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CLMAT3   52287
Cards
Entrez_Gene (NCBI)CLMAT3  101927096  colorectal liver metastasis associated transcript 3
AliasesCTB-113P19.1; SPARC-AS1
GeneCards (Weizmann)CLMAT3
Ensembl hg19 (Hinxton)ENSG00000249035 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249035 [Gene_View]  ENSG00000249035 [Sequence]  chr5:151676945-151687907 [Contig_View]  CLMAT3 [Vega]
ICGC DataPortalENSG00000249035
TCGA cBioPortalCLMAT3
AceView (NCBI)CLMAT3
Genatlas (Paris)CLMAT3
WikiGenes101927096
SOURCE (Princeton)CLMAT3
Genetics Home Reference (NIH)CLMAT3
Genomic and cartography
GoldenPath hg38 (UCSC)CLMAT3  -     chr5:151676945-151687907 +  5q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLMAT3  -     5q33.1   [Description]    (hg19-Feb_2009)
CLMAT3 - 5q33.1 [CytoView hg19]  CLMAT3 - 5q33.1 [CytoView hg38]
Mapping of homologs : NCBICLMAT3 [Mapview hg19]  CLMAT3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039364
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLMAT3
Cluster EST : UnigeneHs.571023 [ NCBI ]
CGAP (NCI)Hs.571023
Alternative Splicing GalleryENSG00000249035
Gene ExpressionCLMAT3 [ NCBI-GEO ]   CLMAT3 [ EBI - ARRAY_EXPRESS ]   CLMAT3 [ SEEK ]   CLMAT3 [ MEM ]
Gene Expression Viewer (FireBrowse)CLMAT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927096
GTEX Portal (Tissue expression)CLMAT3
Human Protein AtlasENSG00000249035-CLMAT3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CLMAT3
DMDM Disease mutations101927096
Blocks (Seattle)CLMAT3
Human Protein Atlas [tissue]ENSG00000249035-CLMAT3 [tissue]
Protein Interaction databases
FunCoupENSG00000249035
BioGRIDCLMAT3
STRING (EMBL)CLMAT3
ZODIACCLMAT3
Ontologies - Pathways
Huge Navigator CLMAT3 [HugePedia]
snp3D : Map Gene to Disease101927096
BioCentury BCIQCLMAT3
ClinGenCLMAT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927096
Clinical trialCLMAT3
Miscellaneous
canSAR (ICR)CLMAT3 (select the gene name)
DataMed IndexCLMAT3
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLMAT3
EVEXCLMAT3
GoPubMedCLMAT3
iHOPCLMAT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu May 2 12:44:10 CEST 2019

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