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CLMN (calmin)

Identity

Alias_namescalmin (calponin-like
Alias_symbol (synonym)FLJ12383
KIAA1188
KIAA0500
Other alias-
HGNC (Hugo) CLMN
LocusID (NCBI) 79789
Atlas_Id 56061
Location 14q32.13  [Link to chromosome band 14q32]
Location_base_pair Starts at 95181939 and ends at 95319908 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABI1 (10p12.1) / CLMN (14q32.13)CLMN (14q32.13) / CLMN (14q32.13)CLMN (14q32.13) / EVL (14q32.2)
CLMN (14q32.13) / LOC100506714 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLMN   19972
Cards
Entrez_Gene (NCBI)CLMN  79789  calmin
Aliases
GeneCards (Weizmann)CLMN
Ensembl hg19 (Hinxton)ENSG00000165959 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165959 [Gene_View]  chr14:95181939-95319908 [Contig_View]  CLMN [Vega]
ICGC DataPortalENSG00000165959
TCGA cBioPortalCLMN
AceView (NCBI)CLMN
Genatlas (Paris)CLMN
WikiGenes79789
SOURCE (Princeton)CLMN
Genetics Home Reference (NIH)CLMN
Genomic and cartography
GoldenPath hg38 (UCSC)CLMN  -     chr14:95181939-95319908 -  14q32.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLMN  -     14q32.13   [Description]    (hg19-Feb_2009)
EnsemblCLMN - 14q32.13 [CytoView hg19]  CLMN - 14q32.13 [CytoView hg38]
Mapping of homologs : NCBICLMN [Mapview hg19]  CLMN [Mapview hg38]
OMIM611121   
Gene and transcription
Genbank (Entrez)AB007969 AB033014 AB047979 AK022279 AK023828
RefSeq transcript (Entrez)NM_024734
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLMN
Cluster EST : UnigeneHs.301478 [ NCBI ]
CGAP (NCI)Hs.301478
Alternative Splicing GalleryENSG00000165959
Gene ExpressionCLMN [ NCBI-GEO ]   CLMN [ EBI - ARRAY_EXPRESS ]   CLMN [ SEEK ]   CLMN [ MEM ]
Gene Expression Viewer (FireBrowse)CLMN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79789
GTEX Portal (Tissue expression)CLMN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JQ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JQ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JQ2
Splice isoforms : SwissVarQ96JQ2
PhosPhoSitePlusQ96JQ2
Domaine pattern : Prosite (Expaxy)ACTININ_1 (PS00019)    ACTININ_2 (PS00020)    CH (PS50021)   
Domains : Interpro (EBI)Actinin_actin-bd_CS    CH-domain   
Domain families : Pfam (Sanger)CH (PF00307)   
Domain families : Pfam (NCBI)pfam00307   
Domain families : Smart (EMBL)CH (SM00033)  
Conserved Domain (NCBI)CLMN
DMDM Disease mutations79789
Blocks (Seattle)CLMN
SuperfamilyQ96JQ2
Human Protein AtlasENSG00000165959
Peptide AtlasQ96JQ2
HPRD13076
IPIIPI00101942   IPI00449029   IPI01025735   IPI01025381   IPI01025524   IPI01026094   
Protein Interaction databases
DIP (DOE-UCLA)Q96JQ2
IntAct (EBI)Q96JQ2
FunCoupENSG00000165959
BioGRIDCLMN
STRING (EMBL)CLMN
ZODIACCLMN
Ontologies - Pathways
QuickGOQ96JQ2
Ontology : AmiGOactin binding  cytoplasm  negative regulation of cell proliferation  integral component of membrane  neuron projection development  
Ontology : EGO-EBIactin binding  cytoplasm  negative regulation of cell proliferation  integral component of membrane  neuron projection development  
NDEx NetworkCLMN
Atlas of Cancer Signalling NetworkCLMN
Wikipedia pathwaysCLMN
Orthology - Evolution
OrthoDB79789
GeneTree (enSembl)ENSG00000165959
Phylogenetic Trees/Animal Genes : TreeFamCLMN
HOVERGENQ96JQ2
HOGENOMQ96JQ2
Homologs : HomoloGeneCLMN
Homology/Alignments : Family Browser (UCSC)CLMN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLMN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLMN
dbVarCLMN
ClinVarCLMN
1000_GenomesCLMN 
Exome Variant ServerCLMN
ExAC (Exome Aggregation Consortium)CLMN (select the gene name)
Genetic variants : HAPMAP79789
Genomic Variants (DGV)CLMN [DGVbeta]
DECIPHERCLMN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLMN 
Mutations
ICGC Data PortalCLMN 
TCGA Data PortalCLMN 
Broad Tumor PortalCLMN
OASIS PortalCLMN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLMN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLMN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLMN
DgiDB (Drug Gene Interaction Database)CLMN
DoCM (Curated mutations)CLMN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLMN (select a term)
intoGenCLMN
Cancer3DCLMN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611121   
Orphanet
MedgenCLMN
Genetic Testing Registry CLMN
NextProtQ96JQ2 [Medical]
TSGene79789
GENETestsCLMN
Huge Navigator CLMN [HugePedia]
snp3D : Map Gene to Disease79789
BioCentury BCIQCLMN
ClinGenCLMN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79789
Chemical/Pharm GKB GenePA134945356
Clinical trialCLMN
Miscellaneous
canSAR (ICR)CLMN (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLMN
EVEXCLMN
GoPubMedCLMN
iHOPCLMN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:10:58 CEST 2017

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