Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CLMP (CXADR like membrane protein)

Identity

Alias_symbol (synonym)ASAM
FLJ22415
ACAM
Other aliasCSBM
CSBS
HGNC (Hugo) CLMP
LocusID (NCBI) 79827
Atlas_Id 53366
Location 11q24.1  [Link to chromosome band 11q24]
Location_base_pair Starts at 123072006 and ends at 123195305 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CLMP (11q24.1) / FARP1 (13q32.2)CLMP (11q24.1) / HSPA8 (11q24.1)TMEM135 (11q14.2) / CLMP (11q24.1)
TMEM135 11q14.2 / CLMP 11q24.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(11;11)(q14;q24) TMEM135/CLMP

External links

Nomenclature
HGNC (Hugo)CLMP   24039
Cards
Entrez_Gene (NCBI)CLMP  79827  CXADR like membrane protein
AliasesACAM; ASAM; CSBM; CSBS
GeneCards (Weizmann)CLMP
Ensembl hg19 (Hinxton)ENSG00000166250 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166250 [Gene_View]  ENSG00000166250 [Sequence]  chr11:123072006-123195305 [Contig_View]  CLMP [Vega]
ICGC DataPortalENSG00000166250
TCGA cBioPortalCLMP
AceView (NCBI)CLMP
Genatlas (Paris)CLMP
WikiGenes79827
SOURCE (Princeton)CLMP
Genetics Home Reference (NIH)CLMP
Genomic and cartography
GoldenPath hg38 (UCSC)CLMP  -     chr11:123072006-123195305 -  11q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLMP  -     11q24.1   [Description]    (hg19-Feb_2009)
EnsemblCLMP - 11q24.1 [CytoView hg19]  CLMP - 11q24.1 [CytoView hg38]
Mapping of homologs : NCBICLMP [Mapview hg19]  CLMP [Mapview hg38]
OMIM611693   615237   
Gene and transcription
Genbank (Entrez)AK026068 AK304843 AY326422 AY358340 BC009371
RefSeq transcript (Entrez)NM_024769
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLMP
Cluster EST : UnigeneHs.591949 [ NCBI ]
CGAP (NCI)Hs.591949
Alternative Splicing GalleryENSG00000166250
Gene ExpressionCLMP [ NCBI-GEO ]   CLMP [ EBI - ARRAY_EXPRESS ]   CLMP [ SEEK ]   CLMP [ MEM ]
Gene Expression Viewer (FireBrowse)CLMP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79827
GTEX Portal (Tissue expression)CLMP
Human Protein AtlasENSG00000166250-CLMP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6B4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6B4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6B4
Splice isoforms : SwissVarQ9H6B4
PhosPhoSitePlusQ9H6B4
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13895    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  IGv (SM00406)  
Conserved Domain (NCBI)CLMP
DMDM Disease mutations79827
Blocks (Seattle)CLMP
SuperfamilyQ9H6B4
Human Protein Atlas [tissue]ENSG00000166250-CLMP [tissue]
Peptide AtlasQ9H6B4
HPRD16513
IPIIPI00024929   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6B4
IntAct (EBI)Q9H6B4
FunCoupENSG00000166250
BioGRIDCLMP
STRING (EMBL)CLMP
ZODIACCLMP
Ontologies - Pathways
QuickGOQ9H6B4
Ontology : AmiGOcytoplasmic microtubule  plasma membrane  bicellular tight junction  cell surface  integral component of membrane  digestive tract development  extracellular exosome  
Ontology : EGO-EBIcytoplasmic microtubule  plasma membrane  bicellular tight junction  cell surface  integral component of membrane  digestive tract development  extracellular exosome  
NDEx NetworkCLMP
Atlas of Cancer Signalling NetworkCLMP
Wikipedia pathwaysCLMP
Orthology - Evolution
OrthoDB79827
GeneTree (enSembl)ENSG00000166250
Phylogenetic Trees/Animal Genes : TreeFamCLMP
HOVERGENQ9H6B4
HOGENOMQ9H6B4
Homologs : HomoloGeneCLMP
Homology/Alignments : Family Browser (UCSC)CLMP
Gene fusions - Rearrangements
Fusion : MitelmanTMEM135/CLMP [11q14.2/11q24.1]  [t(11;11)(q14;q24)]  
Fusion PortalTMEM135 11q14.2 CLMP 11q24.1 BRCA
Fusion : QuiverCLMP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLMP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLMP
dbVarCLMP
ClinVarCLMP
1000_GenomesCLMP 
Exome Variant ServerCLMP
ExAC (Exome Aggregation Consortium)ENSG00000166250
GNOMAD BrowserENSG00000166250
Genetic variants : HAPMAP79827
Genomic Variants (DGV)CLMP [DGVbeta]
DECIPHERCLMP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLMP 
Mutations
ICGC Data PortalCLMP 
TCGA Data PortalCLMP 
Broad Tumor PortalCLMP
OASIS PortalCLMP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLMP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLMP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLMP
DgiDB (Drug Gene Interaction Database)CLMP
DoCM (Curated mutations)CLMP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLMP (select a term)
intoGenCLMP
Cancer3DCLMP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611693    615237   
Orphanet516   
DisGeNETCLMP
MedgenCLMP
Genetic Testing Registry CLMP
NextProtQ9H6B4 [Medical]
TSGene79827
GENETestsCLMP
Target ValidationCLMP
Huge Navigator CLMP [HugePedia]
snp3D : Map Gene to Disease79827
BioCentury BCIQCLMP
ClinGenCLMP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79827
Chemical/Pharm GKB GenePA166048956
Clinical trialCLMP
Miscellaneous
canSAR (ICR)CLMP (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLMP
EVEXCLMP
GoPubMedCLMP
iHOPCLMP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 22 16:19:55 CEST 2018
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