Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CLMP (CXADR like membrane protein)

Identity

Alias (NCBI)ACAM
ASAM
CSBM
CSBS
HGNC (Hugo) CLMP
HGNC Alias symbASAM
FLJ22415
ACAM
HGNC Alias nameadipocyte-specific adhesion molecule
 coxsackie- and adenovirus receptor-like membrane protein
 adipocyte adhesion molecule
LocusID (NCBI) 79827
Atlas_Id 53366
Location 11q24.1  [Link to chromosome band 11q24]
Location_base_pair Starts at 123069872 and ends at 123195248 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CLMP (11q24.1) / FARP1 (13q32.2)CLMP (11q24.1) / HSPA8 (11q24.1)TMEM135 (11q14.2) / CLMP (11q24.1)
TMEM135 11q14.2 / CLMP 11q24.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(11;11)(q14;q24) TMEM135/CLMP

External links

Nomenclature
HGNC (Hugo)CLMP   24039
Cards
Entrez_Gene (NCBI)CLMP    CXADR like membrane protein
AliasesACAM; ASAM; CSBM; CSBS
GeneCards (Weizmann)CLMP
Ensembl hg19 (Hinxton)ENSG00000166250 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166250 [Gene_View]  ENSG00000166250 [Sequence]  chr11:123069872-123195248 [Contig_View]  CLMP [Vega]
ICGC DataPortalENSG00000166250
TCGA cBioPortalCLMP
AceView (NCBI)CLMP
Genatlas (Paris)CLMP
SOURCE (Princeton)CLMP
Genetics Home Reference (NIH)CLMP
Genomic and cartography
GoldenPath hg38 (UCSC)CLMP  -     chr11:123069872-123195248 -  11q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLMP  -     11q24.1   [Description]    (hg19-Feb_2009)
GoldenPathCLMP - 11q24.1 [CytoView hg19]  CLMP - 11q24.1 [CytoView hg38]
ImmunoBaseENSG00000166250
genome Data Viewer NCBICLMP [Mapview hg19]  
OMIM611693   615237   
Gene and transcription
Genbank (Entrez)AK026068 AK304843 AY326422 AY358340 BC009371
RefSeq transcript (Entrez)NM_024769
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLMP
Alternative Splicing GalleryENSG00000166250
Gene ExpressionCLMP [ NCBI-GEO ]   CLMP [ EBI - ARRAY_EXPRESS ]   CLMP [ SEEK ]   CLMP [ MEM ]
Gene Expression Viewer (FireBrowse)CLMP [ Firebrowse - Broad ]
GenevisibleExpression of CLMP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79827
GTEX Portal (Tissue expression)CLMP
Human Protein AtlasENSG00000166250-CLMP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6B4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6B4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6B4
Splice isoforms : SwissVarQ9H6B4
PhosPhoSitePlusQ9H6B4
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)CLMP    Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13895    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  IGv (SM00406)  
Conserved Domain (NCBI)CLMP
Blocks (Seattle)CLMP
SuperfamilyQ9H6B4
Human Protein Atlas [tissue]ENSG00000166250-CLMP [tissue]
Peptide AtlasQ9H6B4
HPRD16513
IPIIPI00024929   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6B4
IntAct (EBI)Q9H6B4
BioGRIDCLMP
STRING (EMBL)CLMP
ZODIACCLMP
Ontologies - Pathways
QuickGOQ9H6B4
Ontology : AmiGOcytoplasmic microtubule  plasma membrane  bicellular tight junction  cell surface  integral component of membrane  digestive tract development  
Ontology : EGO-EBIcytoplasmic microtubule  plasma membrane  bicellular tight junction  cell surface  integral component of membrane  digestive tract development  
NDEx NetworkCLMP
Atlas of Cancer Signalling NetworkCLMP
Wikipedia pathwaysCLMP
Orthology - Evolution
OrthoDB79827
GeneTree (enSembl)ENSG00000166250
Phylogenetic Trees/Animal Genes : TreeFamCLMP
HOGENOMQ9H6B4
Homologs : HomoloGeneCLMP
Homology/Alignments : Family Browser (UCSC)CLMP
Gene fusions - Rearrangements
Fusion : MitelmanTMEM135/CLMP [11q14.2/11q24.1]  
Fusion PortalTMEM135 11q14.2 CLMP 11q24.1 BRCA
Fusion : QuiverCLMP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLMP [hg38]
dbVarCLMP
ClinVarCLMP
MonarchCLMP
1000_GenomesCLMP 
Exome Variant ServerCLMP
GNOMAD BrowserENSG00000166250
Varsome BrowserCLMP
Genomic Variants (DGV)CLMP [DGVbeta]
DECIPHERCLMP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLMP 
Mutations
ICGC Data PortalCLMP 
TCGA Data PortalCLMP 
Broad Tumor PortalCLMP
OASIS PortalCLMP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLMP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCLMP
Mutations and Diseases : HGMDCLMP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLMP
DgiDB (Drug Gene Interaction Database)CLMP
DoCM (Curated mutations)CLMP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLMP (select a term)
intoGenCLMP
Cancer3DCLMP(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611693    615237   
Orphanet516   
DisGeNETCLMP
MedgenCLMP
Genetic Testing Registry CLMP
NextProtQ9H6B4 [Medical]
GENETestsCLMP
Target ValidationCLMP
Huge Navigator CLMP [HugePedia]
ClinGenCLMP
Clinical trials, drugs, therapy
MyCancerGenomeCLMP
Protein Interactions : CTD
Pharm GKB GenePA166048956
PharosQ9H6B4
Clinical trialCLMP
Miscellaneous
canSAR (ICR)CLMP (select the gene name)
HarmonizomeCLMP
DataMed IndexCLMP
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCLMP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri Jan 1 18:10:30 CET 2021
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