Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CLNS1A (chloride nucleotide-sensitive channel 1A)

Identity

Alias_namesCLCI
chloride channel, nucleotide-sensitive, 1A
Alias_symbol (synonym)ICln
Other aliasCLNS1B
HGNC (Hugo) CLNS1A
LocusID (NCBI) 1207
Atlas_Id 61898
Location 11q14.1  [Link to chromosome band 11q14]
Location_base_pair Starts at 77616151 and ends at 77637806 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLNS1A (11q14.1) / AQP11 (11q14.1)EPS15L1 (19p13.11) / CLNS1A (11q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLNS1A   2080
Cards
Entrez_Gene (NCBI)CLNS1A  1207  chloride nucleotide-sensitive channel 1A
AliasesCLCI; CLNS1B; ICln
GeneCards (Weizmann)CLNS1A
Ensembl hg19 (Hinxton)ENSG00000074201 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000074201 [Gene_View]  chr11:77616151-77637806 [Contig_View]  CLNS1A [Vega]
ICGC DataPortalENSG00000074201
TCGA cBioPortalCLNS1A
AceView (NCBI)CLNS1A
Genatlas (Paris)CLNS1A
WikiGenes1207
SOURCE (Princeton)CLNS1A
Genetics Home Reference (NIH)CLNS1A
Genomic and cartography
GoldenPath hg38 (UCSC)CLNS1A  -     chr11:77616151-77637806 -  11q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLNS1A  -     11q14.1   [Description]    (hg19-Feb_2009)
EnsemblCLNS1A - 11q14.1 [CytoView hg19]  CLNS1A - 11q14.1 [CytoView hg38]
Mapping of homologs : NCBICLNS1A [Mapview hg19]  CLNS1A [Mapview hg38]
OMIM602158   
Gene and transcription
Genbank (Entrez)AA757599 AF005422 AF026003 AK315259 AL530926
RefSeq transcript (Entrez)NM_001293 NM_001311199 NM_001311200 NM_001311201 NM_001311202
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLNS1A
Cluster EST : UnigeneHs.430733 [ NCBI ]
CGAP (NCI)Hs.430733
Alternative Splicing GalleryENSG00000074201
Gene ExpressionCLNS1A [ NCBI-GEO ]   CLNS1A [ EBI - ARRAY_EXPRESS ]   CLNS1A [ SEEK ]   CLNS1A [ MEM ]
Gene Expression Viewer (FireBrowse)CLNS1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1207
GTEX Portal (Tissue expression)CLNS1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP54105   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP54105  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP54105
Splice isoforms : SwissVarP54105
PhosPhoSitePlusP54105
Domains : Interpro (EBI)ICln   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CLNS1A
DMDM Disease mutations1207
Blocks (Seattle)CLNS1A
SuperfamilyP54105
Human Protein AtlasENSG00000074201
Peptide AtlasP54105
HPRD03694
IPIIPI00004795   IPI00979926   IPI00980681   IPI00980429   IPI00978541   IPI00981171   
Protein Interaction databases
DIP (DOE-UCLA)P54105
IntAct (EBI)P54105
FunCoupENSG00000074201
BioGRIDCLNS1A
STRING (EMBL)CLNS1A
ZODIACCLNS1A
Ontologies - Pathways
QuickGOP54105
Ontology : AmiGOspliceosomal snRNP assembly  spliceosomal snRNP assembly  RNA binding  protein binding  nucleus  nucleoplasm  cytosol  cytosol  cytoskeleton  plasma membrane  chloride transport  cell volume homeostasis  methylosome  pICln-Sm protein complex  protein heterodimerization activity  
Ontology : EGO-EBIspliceosomal snRNP assembly  spliceosomal snRNP assembly  RNA binding  protein binding  nucleus  nucleoplasm  cytosol  cytosol  cytoskeleton  plasma membrane  chloride transport  cell volume homeostasis  methylosome  pICln-Sm protein complex  protein heterodimerization activity  
Pathways : KEGGRNA transport   
NDEx NetworkCLNS1A
Atlas of Cancer Signalling NetworkCLNS1A
Wikipedia pathwaysCLNS1A
Orthology - Evolution
OrthoDB1207
GeneTree (enSembl)ENSG00000074201
Phylogenetic Trees/Animal Genes : TreeFamCLNS1A
HOVERGENP54105
HOGENOMP54105
Homologs : HomoloGeneCLNS1A
Homology/Alignments : Family Browser (UCSC)CLNS1A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLNS1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLNS1A
dbVarCLNS1A
ClinVarCLNS1A
1000_GenomesCLNS1A 
Exome Variant ServerCLNS1A
ExAC (Exome Aggregation Consortium)CLNS1A (select the gene name)
Genetic variants : HAPMAP1207
Genomic Variants (DGV)CLNS1A [DGVbeta]
DECIPHERCLNS1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLNS1A 
Mutations
ICGC Data PortalCLNS1A 
TCGA Data PortalCLNS1A 
Broad Tumor PortalCLNS1A
OASIS PortalCLNS1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLNS1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLNS1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLNS1A
DgiDB (Drug Gene Interaction Database)CLNS1A
DoCM (Curated mutations)CLNS1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLNS1A (select a term)
intoGenCLNS1A
Cancer3DCLNS1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602158   
Orphanet
MedgenCLNS1A
Genetic Testing Registry CLNS1A
NextProtP54105 [Medical]
TSGene1207
GENETestsCLNS1A
Target ValidationCLNS1A
Huge Navigator CLNS1A [HugePedia]
snp3D : Map Gene to Disease1207
BioCentury BCIQCLNS1A
ClinGenCLNS1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1207
Chemical/Pharm GKB GenePA26607
Clinical trialCLNS1A
Miscellaneous
canSAR (ICR)CLNS1A (select the gene name)
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLNS1A
EVEXCLNS1A
GoPubMedCLNS1A
iHOPCLNS1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:55 CEST 2017

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