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CLNS1A (chloride nucleotide-sensitive channel 1A)

Identity

Alias (NCBI)CLCI
CLNS1B
ICln
HGNC (Hugo) CLNS1A
HGNC Alias symbICln
HGNC Alias namemethylosome subunit pICln
HGNC Previous nameCLCI
HGNC Previous namechloride channel, nucleotide-sensitive, 1A
LocusID (NCBI) 1207
Atlas_Id 61898
Location 11q14.1  [Link to chromosome band 11q14]
Location_base_pair Starts at 77614530 and ends at 77637794 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CLNS1A (11q14.1) / AQP11 (11q14.1)EPS15L1 (19p13.11) / CLNS1A (11q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CLNS1A   2080
Cards
Entrez_Gene (NCBI)CLNS1A    chloride nucleotide-sensitive channel 1A
AliasesCLCI; CLNS1B; ICln
GeneCards (Weizmann)CLNS1A
Ensembl hg19 (Hinxton)ENSG00000074201 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000074201 [Gene_View]  ENSG00000074201 [Sequence]  chr11:77614530-77637794 [Contig_View]  CLNS1A [Vega]
ICGC DataPortalENSG00000074201
TCGA cBioPortalCLNS1A
AceView (NCBI)CLNS1A
Genatlas (Paris)CLNS1A
SOURCE (Princeton)CLNS1A
Genetics Home Reference (NIH)CLNS1A
Genomic and cartography
GoldenPath hg38 (UCSC)CLNS1A  -     chr11:77614530-77637794 -  11q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLNS1A  -     11q14.1   [Description]    (hg19-Feb_2009)
GoldenPathCLNS1A - 11q14.1 [CytoView hg19]  CLNS1A - 11q14.1 [CytoView hg38]
ImmunoBaseENSG00000074201
Genome Data Viewer NCBICLNS1A [Mapview hg19]  
OMIM602158   
Gene and transcription
Genbank (Entrez)AA757599 AF005422 AF026003 AK315259 AL530926
RefSeq transcript (Entrez)NM_001293 NM_001311199 NM_001311200 NM_001311201 NM_001311202
Consensus coding sequences : CCDS (NCBI)CLNS1A
Gene ExpressionCLNS1A [ NCBI-GEO ]   CLNS1A [ EBI - ARRAY_EXPRESS ]   CLNS1A [ SEEK ]   CLNS1A [ MEM ]
Gene Expression Viewer (FireBrowse)CLNS1A [ Firebrowse - Broad ]
GenevisibleExpression of CLNS1A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1207
GTEX Portal (Tissue expression)CLNS1A
Human Protein AtlasENSG00000074201-CLNS1A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP54105   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP54105  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP54105
PhosPhoSitePlusP54105
Domains : Interpro (EBI)ICln    ICln/Lot5   
Domain families : Pfam (Sanger)Voldacs (PF03517)   
Domain families : Pfam (NCBI)pfam03517   
Conserved Domain (NCBI)CLNS1A
PDB (RSDB)6V0O   
PDB Europe6V0O   
PDB (PDBSum)6V0O   
PDB (IMB)6V0O   
Structural Biology KnowledgeBase6V0O   
SCOP (Structural Classification of Proteins)6V0O   
CATH (Classification of proteins structures)6V0O   
SuperfamilyP54105
AlphaFold pdb e-kbP54105   
Human Protein Atlas [tissue]ENSG00000074201-CLNS1A [tissue]
HPRD03694
Protein Interaction databases
DIP (DOE-UCLA)P54105
IntAct (EBI)P54105
BioGRIDCLNS1A
STRING (EMBL)CLNS1A
ZODIACCLNS1A
Ontologies - Pathways
QuickGOP54105
Ontology : AmiGOspliceosomal snRNP assembly  spliceosomal snRNP assembly  RNA binding  protein binding  nucleus  nucleoplasm  cytosol  cytosol  cytoskeleton  plasma membrane  chloride transport  cell volume homeostasis  methylosome  pICln-Sm protein complex  
Ontology : EGO-EBIspliceosomal snRNP assembly  spliceosomal snRNP assembly  RNA binding  protein binding  nucleus  nucleoplasm  cytosol  cytosol  cytoskeleton  plasma membrane  chloride transport  cell volume homeostasis  methylosome  pICln-Sm protein complex  
NDEx NetworkCLNS1A
Atlas of Cancer Signalling NetworkCLNS1A
Wikipedia pathwaysCLNS1A
Orthology - Evolution
OrthoDB1207
GeneTree (enSembl)ENSG00000074201
Phylogenetic Trees/Animal Genes : TreeFamCLNS1A
Homologs : HomoloGeneCLNS1A
Homology/Alignments : Family Browser (UCSC)CLNS1A
Gene fusions - Rearrangements
Fusion : QuiverCLNS1A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLNS1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLNS1A
dbVarCLNS1A
ClinVarCLNS1A
MonarchCLNS1A
1000_GenomesCLNS1A 
Exome Variant ServerCLNS1A
GNOMAD BrowserENSG00000074201
Varsome BrowserCLNS1A
ACMGCLNS1A variants
VarityP54105
Genomic Variants (DGV)CLNS1A [DGVbeta]
DECIPHERCLNS1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLNS1A 
Mutations
ICGC Data PortalCLNS1A 
TCGA Data PortalCLNS1A 
Broad Tumor PortalCLNS1A
OASIS PortalCLNS1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLNS1A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCLNS1A
Mutations and Diseases : HGMDCLNS1A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCLNS1A
DgiDB (Drug Gene Interaction Database)CLNS1A
DoCM (Curated mutations)CLNS1A
CIViC (Clinical Interpretations of Variants in Cancer)CLNS1A
Cancer3DCLNS1A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602158   
Orphanet
DisGeNETCLNS1A
MedgenCLNS1A
Genetic Testing Registry CLNS1A
NextProtP54105 [Medical]
GENETestsCLNS1A
Target ValidationCLNS1A
Huge Navigator CLNS1A [HugePedia]
ClinGenCLNS1A
Clinical trials, drugs, therapy
MyCancerGenomeCLNS1A
Protein Interactions : CTDCLNS1A
Pharm GKB GenePA26607
PharosP54105
Clinical trialCLNS1A
Miscellaneous
canSAR (ICR)CLNS1A
HarmonizomeCLNS1A
DataMed IndexCLNS1A
Probes
Litterature
PubMed86 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCLNS1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:46:18 CEST 2021

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