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CLPS (colipase)

Identity

Alias_namescolipase
Other alias-
HGNC (Hugo) CLPS
LocusID (NCBI) 1208
Atlas_Id 54878
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 35794982 and ends at 35797344 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLPS   2085
Cards
Entrez_Gene (NCBI)CLPS  1208  colipase
Aliases
GeneCards (Weizmann)CLPS
Ensembl hg19 (Hinxton)ENSG00000137392 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137392 [Gene_View]  ENSG00000137392 [Sequence]  chr6:35794982-35797344 [Contig_View]  CLPS [Vega]
ICGC DataPortalENSG00000137392
TCGA cBioPortalCLPS
AceView (NCBI)CLPS
Genatlas (Paris)CLPS
WikiGenes1208
SOURCE (Princeton)CLPS
Genetics Home Reference (NIH)CLPS
Genomic and cartography
GoldenPath hg38 (UCSC)CLPS  -     chr6:35794982-35797344 -  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLPS  -     6p21.31   [Description]    (hg19-Feb_2009)
EnsemblCLPS - 6p21.31 [CytoView hg19]  CLPS - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBICLPS [Mapview hg19]  CLPS [Mapview hg38]
OMIM120105   
Gene and transcription
Genbank (Entrez)AY780648 AY780649 BC007061 BC017897 BC025693
RefSeq transcript (Entrez)NM_001252597 NM_001252598 NM_001832
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLPS
Cluster EST : UnigeneHs.1340 [ NCBI ]
CGAP (NCI)Hs.1340
Alternative Splicing GalleryENSG00000137392
Gene ExpressionCLPS [ NCBI-GEO ]   CLPS [ EBI - ARRAY_EXPRESS ]   CLPS [ SEEK ]   CLPS [ MEM ]
Gene Expression Viewer (FireBrowse)CLPS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1208
GTEX Portal (Tissue expression)CLPS
Human Protein AtlasENSG00000137392-CLPS [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP04118   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP04118  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP04118
Splice isoforms : SwissVarP04118
PhosPhoSitePlusP04118
Domaine pattern : Prosite (Expaxy)COLIPASE_1 (PS00121)    COLIPASE_2 (PS51342)   
Domains : Interpro (EBI)Colipase    Colipase_C    Colipase_CS    Colipase_N   
Domain families : Pfam (Sanger)Colipase (PF01114)    Colipase_C (PF02740)   
Domain families : Pfam (NCBI)pfam01114    pfam02740   
Domain families : Smart (EMBL)COLIPASE (SM00023)  
Conserved Domain (NCBI)CLPS
DMDM Disease mutations1208
Blocks (Seattle)CLPS
SuperfamilyP04118
Human Protein Atlas [tissue]ENSG00000137392-CLPS [tissue]
Peptide AtlasP04118
HPRD00356
IPIIPI00022232   IPI01012721   
Protein Interaction databases
DIP (DOE-UCLA)P04118
IntAct (EBI)P04118
FunCoupENSG00000137392
BioGRIDCLPS
STRING (EMBL)CLPS
ZODIACCLPS
Ontologies - Pathways
QuickGOP04118
Ontology : AmiGOextracellular region  lipid metabolic process  digestion  enzyme activator activity  response to bacterium  lipid catabolic process  response to food  positive regulation of catalytic activity  
Ontology : EGO-EBIextracellular region  lipid metabolic process  digestion  enzyme activator activity  response to bacterium  lipid catabolic process  response to food  positive regulation of catalytic activity  
Pathways : KEGGFat digestion and absorption   
NDEx NetworkCLPS
Atlas of Cancer Signalling NetworkCLPS
Wikipedia pathwaysCLPS
Orthology - Evolution
OrthoDB1208
GeneTree (enSembl)ENSG00000137392
Phylogenetic Trees/Animal Genes : TreeFamCLPS
HOVERGENP04118
HOGENOMP04118
Homologs : HomoloGeneCLPS
Homology/Alignments : Family Browser (UCSC)CLPS
Gene fusions - Rearrangements
Fusion : QuiverCLPS
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLPS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLPS
dbVarCLPS
ClinVarCLPS
1000_GenomesCLPS 
Exome Variant ServerCLPS
ExAC (Exome Aggregation Consortium)ENSG00000137392
GNOMAD BrowserENSG00000137392
Varsome BrowserCLPS
Genetic variants : HAPMAP1208
Genomic Variants (DGV)CLPS [DGVbeta]
DECIPHERCLPS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLPS 
Mutations
ICGC Data PortalCLPS 
TCGA Data PortalCLPS 
Broad Tumor PortalCLPS
OASIS PortalCLPS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLPS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLPS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLPS
DgiDB (Drug Gene Interaction Database)CLPS
DoCM (Curated mutations)CLPS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLPS (select a term)
intoGenCLPS
Cancer3DCLPS(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM120105   
Orphanet
DisGeNETCLPS
MedgenCLPS
Genetic Testing Registry CLPS
NextProtP04118 [Medical]
TSGene1208
GENETestsCLPS
Target ValidationCLPS
Huge Navigator CLPS [HugePedia]
snp3D : Map Gene to Disease1208
BioCentury BCIQCLPS
ClinGenCLPS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1208
Chemical/Pharm GKB GenePA26611
Clinical trialCLPS
Miscellaneous
canSAR (ICR)CLPS (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLPS
EVEXCLPS
GoPubMedCLPS
iHOPCLPS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 10:58:56 CET 2018

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