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CLPSL1 (colipase like 1)

Identity

Alias_namesC6orf127
chromosome 6 open reading frame 127
colipase-like 1
Alias_symbol (synonym)dJ510O8.6
Other aliasESP32
HGNC (Hugo) CLPSL1
LocusID (NCBI) 340204
Atlas_Id 61900
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 35781017 and ends at 35788152 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BTBD9 (6p21.2) / CLPSL1 (6p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(p21;p21) BTBD9/CLPSL1


External links

Nomenclature
HGNC (Hugo)CLPSL1   21251
Cards
Entrez_Gene (NCBI)CLPSL1  340204  colipase like 1
AliasesC6orf127; ESP32; dJ510O8.6
GeneCards (Weizmann)CLPSL1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:35781017-35788152 [Contig_View]  CLPSL1 [Vega]
TCGA cBioPortalCLPSL1
AceView (NCBI)CLPSL1
Genatlas (Paris)CLPSL1
WikiGenes340204
SOURCE (Princeton)CLPSL1
Genetics Home Reference (NIH)CLPSL1
Genomic and cartography
GoldenPath hg38 (UCSC)CLPSL1  -     chr6:35781017-35788152 +  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLPSL1  -     6p21.31   [Description]    (hg19-Feb_2009)
EnsemblCLPSL1 - 6p21.31 [CytoView hg19]  CLPSL1 - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBICLPSL1 [Mapview hg19]  CLPSL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI018488 BC133046 BC137392 BC150543 BC150544
RefSeq transcript (Entrez)NM_001010886 NM_001348773
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLPSL1
Cluster EST : UnigeneHs.131296 [ NCBI ]
CGAP (NCI)Hs.131296
Gene ExpressionCLPSL1 [ NCBI-GEO ]   CLPSL1 [ EBI - ARRAY_EXPRESS ]   CLPSL1 [ SEEK ]   CLPSL1 [ MEM ]
Gene Expression Viewer (FireBrowse)CLPSL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340204
GTEX Portal (Tissue expression)CLPSL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2RUU4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2RUU4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2RUU4
Splice isoforms : SwissVarA2RUU4
PhosPhoSitePlusA2RUU4
Domaine pattern : Prosite (Expaxy)COLIPASE_2 (PS51342)   
Domains : Interpro (EBI)Colipase   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)COLIPASE (SM00023)  
Conserved Domain (NCBI)CLPSL1
DMDM Disease mutations340204
Blocks (Seattle)CLPSL1
SuperfamilyA2RUU4
Peptide AtlasA2RUU4
HPRD17356
IPIIPI00796447   IPI00646539   IPI01013846   IPI01018765   
Protein Interaction databases
DIP (DOE-UCLA)A2RUU4
IntAct (EBI)A2RUU4
BioGRIDCLPSL1
STRING (EMBL)CLPSL1
ZODIACCLPSL1
Ontologies - Pathways
QuickGOA2RUU4
Ontology : AmiGOextracellular region  digestion  enzyme activator activity  lipid catabolic process  response to food  positive regulation of catalytic activity  
Ontology : EGO-EBIextracellular region  digestion  enzyme activator activity  lipid catabolic process  response to food  positive regulation of catalytic activity  
NDEx NetworkCLPSL1
Atlas of Cancer Signalling NetworkCLPSL1
Wikipedia pathwaysCLPSL1
Orthology - Evolution
OrthoDB340204
Phylogenetic Trees/Animal Genes : TreeFamCLPSL1
HOVERGENA2RUU4
HOGENOMA2RUU4
Homologs : HomoloGeneCLPSL1
Homology/Alignments : Family Browser (UCSC)CLPSL1
Gene fusions - Rearrangements
Fusion : QuiverCLPSL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLPSL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLPSL1
dbVarCLPSL1
ClinVarCLPSL1
1000_GenomesCLPSL1 
Exome Variant ServerCLPSL1
Varsome BrowserCLPSL1
Genetic variants : HAPMAP340204
Genomic Variants (DGV)CLPSL1 [DGVbeta]
DECIPHERCLPSL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLPSL1 
Mutations
ICGC Data PortalCLPSL1 
TCGA Data PortalCLPSL1 
Broad Tumor PortalCLPSL1
OASIS PortalCLPSL1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCLPSL1
BioMutasearch CLPSL1
DgiDB (Drug Gene Interaction Database)CLPSL1
DoCM (Curated mutations)CLPSL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLPSL1 (select a term)
intoGenCLPSL1
Cancer3DCLPSL1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCLPSL1
MedgenCLPSL1
Genetic Testing Registry CLPSL1
NextProtA2RUU4 [Medical]
TSGene340204
GENETestsCLPSL1
Target ValidationCLPSL1
Huge Navigator CLPSL1 [HugePedia]
snp3D : Map Gene to Disease340204
BioCentury BCIQCLPSL1
ClinGenCLPSL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340204
Chemical/Pharm GKB GenePA134984810
Clinical trialCLPSL1
Miscellaneous
canSAR (ICR)CLPSL1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLPSL1
EVEXCLPSL1
GoPubMedCLPSL1
iHOPCLPSL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:40:53 CEST 2018

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