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CLPSL2 (colipase like 2)

Identity

Alias_namesC6orf126
chromosome 6 open reading frame 126
colipase-like 2
Alias_symbol (synonym)dJ510O8.5
UNQ3045
Other aliasAAAL3045
HGNC (Hugo) CLPSL2
LocusID (NCBI) 389383
Atlas_Id 61901
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 35776594 and ends at 35779552 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLPSL2   21250
Cards
Entrez_Gene (NCBI)CLPSL2  389383  colipase like 2
AliasesAAAL3045; C6orf126; UNQ3045; dJ510O8.5
GeneCards (Weizmann)CLPSL2
Ensembl hg19 (Hinxton)ENSG00000196748 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196748 [Gene_View]  chr6:35776594-35779552 [Contig_View]  CLPSL2 [Vega]
ICGC DataPortalENSG00000196748
TCGA cBioPortalCLPSL2
AceView (NCBI)CLPSL2
Genatlas (Paris)CLPSL2
WikiGenes389383
SOURCE (Princeton)CLPSL2
Genetics Home Reference (NIH)CLPSL2
Genomic and cartography
GoldenPath hg38 (UCSC)CLPSL2  -     chr6:35776594-35779552 +  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLPSL2  -     6p21.31   [Description]    (hg19-Feb_2009)
EnsemblCLPSL2 - 6p21.31 [CytoView hg19]  CLPSL2 - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBICLPSL2 [Mapview hg19]  CLPSL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA861820 AW665167 AY358823 BC172344 CD513822
RefSeq transcript (Entrez)NM_001286550 NM_207409
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLPSL2
Cluster EST : UnigeneHs.259563 [ NCBI ]
CGAP (NCI)Hs.259563
Alternative Splicing GalleryENSG00000196748
Gene ExpressionCLPSL2 [ NCBI-GEO ]   CLPSL2 [ EBI - ARRAY_EXPRESS ]   CLPSL2 [ SEEK ]   CLPSL2 [ MEM ]
Gene Expression Viewer (FireBrowse)CLPSL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389383
GTEX Portal (Tissue expression)CLPSL2
Human Protein AtlasENSG00000196748-CLPSL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWE3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWE3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWE3
Splice isoforms : SwissVarQ6UWE3
PhosPhoSitePlusQ6UWE3
Domaine pattern : Prosite (Expaxy)COLIPASE_2 (PS51342)   
Domains : Interpro (EBI)Colipase   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CLPSL2
DMDM Disease mutations389383
Blocks (Seattle)CLPSL2
SuperfamilyQ6UWE3
Human Protein Atlas [tissue]ENSG00000196748-CLPSL2 [tissue]
Peptide AtlasQ6UWE3
HPRD15616
IPIIPI00877671   IPI00410475   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWE3
IntAct (EBI)Q6UWE3
FunCoupENSG00000196748
BioGRIDCLPSL2
STRING (EMBL)CLPSL2
ZODIACCLPSL2
Ontologies - Pathways
QuickGOQ6UWE3
Ontology : AmiGOextracellular region  digestion  enzyme activator activity  lipid catabolic process  response to food  positive regulation of catalytic activity  
Ontology : EGO-EBIextracellular region  digestion  enzyme activator activity  lipid catabolic process  response to food  positive regulation of catalytic activity  
NDEx NetworkCLPSL2
Atlas of Cancer Signalling NetworkCLPSL2
Wikipedia pathwaysCLPSL2
Orthology - Evolution
OrthoDB389383
GeneTree (enSembl)ENSG00000196748
Phylogenetic Trees/Animal Genes : TreeFamCLPSL2
HOVERGENQ6UWE3
HOGENOMQ6UWE3
Homologs : HomoloGeneCLPSL2
Homology/Alignments : Family Browser (UCSC)CLPSL2
Gene fusions - Rearrangements
Fusion : QuiverCLPSL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLPSL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLPSL2
dbVarCLPSL2
ClinVarCLPSL2
1000_GenomesCLPSL2 
Exome Variant ServerCLPSL2
ExAC (Exome Aggregation Consortium)ENSG00000196748
GNOMAD BrowserENSG00000196748
Genetic variants : HAPMAP389383
Genomic Variants (DGV)CLPSL2 [DGVbeta]
DECIPHERCLPSL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLPSL2 
Mutations
ICGC Data PortalCLPSL2 
TCGA Data PortalCLPSL2 
Broad Tumor PortalCLPSL2
OASIS PortalCLPSL2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCLPSL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLPSL2
DgiDB (Drug Gene Interaction Database)CLPSL2
DoCM (Curated mutations)CLPSL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLPSL2 (select a term)
intoGenCLPSL2
Cancer3DCLPSL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCLPSL2
MedgenCLPSL2
Genetic Testing Registry CLPSL2
NextProtQ6UWE3 [Medical]
TSGene389383
GENETestsCLPSL2
Target ValidationCLPSL2
Huge Navigator CLPSL2 [HugePedia]
snp3D : Map Gene to Disease389383
BioCentury BCIQCLPSL2
ClinGenCLPSL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389383
Chemical/Pharm GKB GenePA134977993
Clinical trialCLPSL2
Miscellaneous
canSAR (ICR)CLPSL2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLPSL2
EVEXCLPSL2
GoPubMedCLPSL2
iHOPCLPSL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:14:57 CET 2018

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