Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CLPTM1 (cleft lip and palate associated transmembrane protein 1)

Identity

Other names-
HGNC (Hugo) CLPTM1
LocusID (NCBI) 1209
Location 19q13.32
Location_base_pair Starts at 45458599 and ends at 45496604 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CLPTM1   2087
Entrez_Gene (NCBI)CLPTM1  1209  cleft lip and palate associated transmembrane protein 1
Cards
GeneCards (Weizmann)CLPTM1
Ensembl (Hinxton)ENSG00000104853 [Gene_View]  chr19:45458599-45496604 [Contig_View]  CLPTM1 [Vega]
AceView (NCBI)CLPTM1
Genatlas (Paris)CLPTM1
SOURCE (Stanford)NM_001199468 NM_001294
Genomic and cartography
GoldenPath (UCSC)CLPTM1  -  19q13.32   chr19:45458599-45496604 +  19q13.32   [Description]    (hg19-Feb_2009)
EnsemblCLPTM1 - 19q13.32 [CytoView]
Mapping of homologs : NCBICLPTM1 [Mapview]
OMIM604783   
Gene and transcription
Genbank (Entrez)AF037339 AK074935 AK075262 AK223553 AK293314
RefSeq transcript (SRS)NM_001199468 NM_001294
RefSeq transcript (Entrez)NM_001199468 NM_001294
RefSeq genomic (SRS)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838496 NW_004078099
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838496 NW_004078099
Consensus coding sequences : CCDS (NCBI)CLPTM1
Cluster EST : UnigeneHs.444441 [ SRS ] Hs.444441 [ NCBI ]
CGAP (NCI)Hs.444441
Alternative Splicing : Fast-db (Paris)GSHG0015005
Alternative Splicing GalleryENSG00000104853
Gene ExpressionCLPTM1 [ NCBI-GEO ]   CLPTM1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO96005 (SRS) O96005 (Uniprot)
NextProtO96005
With graphics : InterProO96005
Splice isoforms : SwissVarO96005(Swissvar)
Domains : Interpro (SRS)CLPTM1   
Domains : Interpro (EBI)CLPTM1   
Related proteins : CluSTrO96005
Domain families : Pfam (SRS)CLPTM1 (PF05602)   
Domain families : Pfam (Sanger)CLPTM1 (PF05602)   
Domain families : Pfam (NCBI)pfam05602   
DMDM1209
Blocks (Seattle)O96005
Human Protein AtlasENSG00000104853
IPIIPI00396411   IPI00107357   IPI01011294   IPI01011759   
Protein Interaction databases
DIP (DOE-UCLA)O96005
IntAct (EBI)O96005
FunCoupENSG00000104853
REACTOMECLPTM1
Protein Interaction Database1209
BioGRIDCLPTM1
InParanoidO96005
Interologous Interaction database O96005
IntegromeDBCLPTM1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CLPTM1
SNP (GeneSNP Utah)CLPTM1
SNP : HGBaseCLPTM1
Genetic variants : HAPMAPCLPTM1
Somatic Mutations in Cancer : COSMICCLPTM1 
CONAN: Copy Number AnalysisCLPTM1 
Mutations and Diseases : HGMDCLPTM1
OMIM604783   
GENETests604783   
Disease Genetic AssociationCLPTM1
Huge Navigator CLPTM1 [HugePedia]  CLPTM1 [HugeCancerGEM]
Genomic VariantsCLPTM1  CLPTM1 [DGVbeta]
snp3D : Map Gene to Disease1209
General knowledge
Homologs : HomoloGeneCLPTM1
Homology/Alignments : Family Browser (UCSC)CLPTM1
Phylogenetic Trees/Animal Genes : TreeFamCLPTM1
Chemical/Protein Interactions : CTD1209
Chemical/Pharm GKB GenePA26613
Clinical trialCLPTM1
Cancer Resource (Charite)ENSG00000104853
Ontology : AmiGOprotein binding  integral to plasma membrane  multicellular organismal development  external side of plasma membrane  cell differentiation  regulation of T cell differentiation in thymus  
Ontology : EGO-EBIprotein binding  integral to plasma membrane  multicellular organismal development  external side of plasma membrane  cell differentiation  regulation of T cell differentiation in thymus  
Other databases
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
PubGeneCLPTM1
iHOPCLPTM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:23:43 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.